RNA id: XM_043220151.1


Basic Information

Item Value
RNA id XM_043220151.1
length 1959
RNA type mRNA
GC content 0.43
exon number 6
gene id si:dkey-1j5.4
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18661509 ~ 18669079 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTATCTCTCTTTGTGTTGCATGTCGCGCTCCAGCgacctctttaaaaaaaaattgtactagTGGTTATAAGTctcatattaaaattttaatttgagcgGGAAGTATAACAGGCTTAACATTTTCCAGTTGAAAacgacgtaaaaaaaaaaaattgttttgtttttagtcagTTTTTGGAAACTGGATTTCGGGCACTATGTGAAGTGCCTCAGTATCTTTTGCGAAATCATAATTGTGTGCTGTGAACAATAACTGAGCTATGAACGTCAATCTCGTACAAGCTTGAGTGGCAGAAGCGTTATCTTCAGAAATCCTCCCTTTGTGTTCCACGGAAGAAAGGAGGGGCAAACATTTCGCCTCGTTTCGGACCGGGCACAGACCGACTGCTAGCTTTGCTTGAAACGGCAGCTTTGAATTTAGACGCTCAAGTCCTATTAAGCATCCGGTCGCAAGGGATATGAAGCTGGTTGCAGGGTTAGTCGTGCTGTGGCTGTGGGTTGCGGAGGCCATTGAAAATTGCCCCGATGCTTGTAAATGCAGCCAGAAATCCAGCATGGAAAAGACTGCAGTCAATTGTCAGAAGAAGGGACTTGAGAGCATCCCACCCAAACTCCCTCTGGACACTTGGATCCTTAAAATGGGTGAAAATTTATTGCAGAACCTCCCAGCCAACATCCTGAGCTCCGTTCCTAAAATTGAGAGCGTAAACTTAGAGCGAAACTCAATCAAATCAATACACCCTCAAGCATTTGCTGGTGCCCAGCGACTGATGCTTCTGAATCTGCAAGGAAACCGAATGTCCAAGCTCCCAGTGAAGGGCTTCAAAGATCTCCTAAACCTACGCTTTCTCATGCTGGGCCAGAATCAGATAGCTAGTCTGAAACCCAACATGTTCATTGGCATGAGGAACCTCTCAGAGCTGGATCTGCCCCTGAACGCCCTCACTGTTCTCCCACCAAATACATTCAAGCCTCTGATTGCCCTCAAAGTCCTGGATCTATCCTTAAACCATATCCAAAGCATCTCACCCAAAACCTTTGTTGGACTTGACGAGCTGCTTTTTCTCAATTTGGACAACAACAAGCTGAAGAATATCCAAGCGGGAACCTTTGCGCCACTGATTGGTCTTGAGATGCTGGTGCTAGACAACAATTTTCTCTCCACACTTACCGCGGCCACACTAGAAGGTCTTTCCAACCTGCAGGAGCTCTATGTGAGAAAAAACGAAATTGAGAGTCTGCCAGCTGACGTGTTCCGTCACACACCTAAACTCACTCACGTTGGCTTAAGTGGGAATCGGCTTCATTCCATTGACGGAAACATGCTAGCCAACATGCAAGGTTTAAAGGAGGTGTTTCTGCACGACAACCCATGGAAATGTGACTGTAGCATAAACTCGCTGGTACACTACCTTGCCCAGACGAGGGCTAATCACTCTCCTCTACAAAGACTTCGCTGCACCAGCCCAGAAGAGTTTCGTGATAGACCCATCCACCAGCTGAAATCTGATGAACTTCCCTGCAGGGCCTAGAAAATCCTCATGGCTGATATCATATCACGAACGACCTCCAAAAGTTGGGAGCGCAGTGAAATAACAGCGTgatattttctgcatttgaatGGCGATGCTTCACAGAACTCCAGCCACAATGACTTTGACAGGTTAATGATAGAGCTACTGTTCTGCAGATAGTCATAATTTTCACCCACACCAGTCGACTATTTTCAGGCCACCTGGAGTATTCTACAATACTAAGAAGGATGtgcctttgtttttttacttatacAAATTAAATGCCTATTTtgttatgtattaataataatatcaatatgtTTTCACGTTTAActtaatatatattctatatattatttatccaaagtgttttttttatggtcCCTCGGCATCTACATACGAAAATAATGTTAGTAGCtgcgtaaataaaaaaatcatacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206504 lncRNA downstream 26843 18627307 ~ 18634666 (-) True G139798
TU206496 lncRNA downstream 62597 18598694 ~ 18598912 (-) True G139790
TU206392 lncRNA downstream 209377 18449962 ~ 18452132 (-) False LOC122324299
XR_006247142.1 lncRNA downstream 209387 18449944 ~ 18452122 (-) False LOC122324299
XR_006247141.1 lncRNA downstream 209393 18449945 ~ 18452116 (-) True LOC122324299
TU206519 lncRNA upstream 359 18669438 ~ 18670933 (-) True G139801
TU206550 lncRNA upstream 155801 18824880 ~ 18829799 (-) True G139823
TU206615 lncRNA upstream 371711 19040790 ~ 19043914 (-) True G139871
TU206658 lncRNA upstream 490759 19159838 ~ 19160157 (-) True G139903
TU206702 lncRNA upstream 555301 19224380 ~ 19250790 (-) True G139940
XM_043220348.1 mRNA downstream 53966 18604651 ~ 18607543 (-) True LOC122325333
XM_043220441.1 mRNA downstream 106215 18528438 ~ 18555294 (-) True ptchd4
XM_043219440.1 mRNA downstream 188250 18453708 ~ 18473259 (-) True tnfrsf21
XM_043218605.1 mRNA downstream 214145 18431833 ~ 18447364 (-) False LOC122324295
XM_043220539.1 mRNA upstream 1873 18670952 ~ 18679703 (-) True lbr
XM_043219342.1 mRNA upstream 11814 18680893 ~ 18733506 (-) True enah
XM_043219446.1 mRNA upstream 97080 18766159 ~ 18779707 (-) True slc5a6a
XM_043219448.1 mRNA upstream 112524 18781603 ~ 18784598 (-) True rpl7l1
XM_043219450.1 mRNA upstream 161345 18830424 ~ 18831573 (-) True ptrhd1
TU206351 other downstream 214560 18406027 ~ 18446949 (-) False G139706
TU206365 other downstream 219217 18406754 ~ 18442292 (-) True G139706
XR_006247304.1 other downstream 311387 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 837308 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 1233438 17346806 ~ 17428071 (-) True erh
unassigned_transcript_2507 other upstream 406967 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 585731 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 592387 19261466 ~ 19262878 (-) True LOC122324949
TU206746 other upstream 631297 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 631297 19300376 ~ 19303968 (-) False angel2

Expression Profile