RNA id: XM_043220167.1


Basic Information

Item Value
RNA id XM_043220167.1
length 1777
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC122325206
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22884107 ~ 22888671 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGGTTCAATGTGTGCATTATACGATCAGTTGACACTGTTTGTCAGATTTTGAAAGGAAAGATGATCACTTTATCTTTTGTCCTGGTCTTAATTACAGTCCAGTGGTCCTGGGCTCAGGAAGACCTTCTTCTGCCTTTCTCTGAACACCTAGACCTCGAGCACAAGGTGCAGCTGAAGTGGGGATTTGATGAGATCCGGGACACCATCTTGTTCGAGCTCACCTTTAACGCTGTCGGCTGGGTCGGTTTCGGCTTCAGCCCCAATGGAGGAATGACTGGAGCCGACGTCGTGATTGGAGGAGTTGGACCCAAAGGGAGTTACTTCACGgaCCGTCATGCTGTGGGGACATCAATTCCTCTGGTTGACAAGCAACAGAACTACAAACTCCTGTCTCTGACCGAGTCTGATGGGAAAACAGTCATGAAGTTTCAGAGGTCCATCAGTTACTGTGATGAAAATGATTTACCCATCACCGGGCTCCCCATGAAGCTGATCTACGCGTACGGAGAAACTGATGAAATCGCGTACCACGGCAACCGAAGAGGCACAAAGGAGCTGAACCTGTTGAAGTACATGCCTCAGTCCAACCCTCCAAACAGCAACTTTTTTGACATAACTATGGTCAATttCACTGTGCCGGCCAACCAAACCTATTATCACTGCAAGGTTATGAAAATCCCAACATTTGAtcacaaaaagcacatttatcgCATTGCGCCGGTGATCACAAACGTTGACATTGTGCATCATCTTGCACTGTACCGCTGTCTTCCAAGCGTGACCGAACCATTTGAGGCGGATTGTTACTCATCATCGTCAAGACTTGCCTTGTGTATCGAGGTCGTGGCTGTGTGGGGAGTTGGTGGACTGGGTTATGAATTTCCAGAAGCAGCAGGACTTCCAATTGGAGGAAATATTAAAGCCTCTTTCTACAAGCTTGAAGTGCATTACAACAACCACAATCTTGCAAGTCGAGTTGATAGCTCAGGTCTGCGATTGCATTACACATCTGAACTCCGTCAGCACGATGCAGGTGTTCTAGTCGTGGGGCTTTCAGTGGCCCCGGGGTATGCCATCCCACCCAAAGCCAAATCCTTCCTCACGTACGGTCTGTGTGACACTGCTTATATTCCAAAGGTTGTGGAGAAGTCAAATGATCTTCAGCTGTTCTCCGTGATGCTGCACGCACACTTAGTTGGGAGAAAAGTGCGAGTCGGACAATTTAGAGAAGGTAGACAGATCGACTTTGTAGCTGTGGATGAAAACTATGATTTTGACTATCAAGAAGTGACCAATTTGGGTGAAACCAAGACCGTGAAGTTGGGTGACAAATTGCTGGTGGAGTGCACCTATAATACTGAGAAACGCAACGCACTCACATGGGGGGGATTTTCAACTTCAGATGAGATGTGTTTGGCAGTCCTCTTCTACTATCCAGCTATGAATCTGAGCACCTGTGTGAGCTTCCCTAATACAACCACTTTAATATCTGAGATGGGAGCAAAAGATCCAGATACTTGGCTCAAAATGATGTCCACAAAGACTTGGACTGACACGTCTATTAATCAGTACCAACAAACACTGAAGAGAATCGACCAGATTGTCCAGGTCATGAATTCAACCAACAACATATCGATCAACACGGGGCTGATTCCTGACCTCAAAGCCATCCCATCTGCACCCTGCATGAATAACACTGCCCAAGCCTTGCATTAATGTTTGCAGGGTGTACCTGTGAGATCTTTGAAAATGgcataaataaatggatgaaaCCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005507 copper ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208271 lncRNA upstream 23781 22858989 ~ 22860327 (+) False si:ch211-203k16.3
TU208266 lncRNA upstream 138322 22745420 ~ 22745786 (+) False matn3a
TU208246 lncRNA upstream 326606 22557229 ~ 22557502 (+) True G141091
TU208239 lncRNA upstream 341576 22542136 ~ 22542532 (+) True G141084
TU208236 lncRNA upstream 342781 22541118 ~ 22541327 (+) True G141081
TU208287 lncRNA downstream 32022 22920693 ~ 22923128 (+) True G141121
TU208355 lncRNA downstream 177916 23066587 ~ 23073665 (+) True G141168
XR_006247220.1 lncRNA downstream 305950 23194621 ~ 23206082 (+) False LOC122324747
XR_006247221.1 lncRNA downstream 305950 23194621 ~ 23206082 (+) False LOC122324747
TU208384 lncRNA downstream 306320 23194991 ~ 23196194 (+) False LOC122324747
XM_043220169.1 mRNA upstream 1132 22878750 ~ 22882976 (+) True LOC122325208
XM_043219253.1 mRNA upstream 24899 22842805 ~ 22859209 (+) True si:ch211-203k16.3
XM_043219254.1 mRNA upstream 24899 22847340 ~ 22859209 (+) False si:ch211-203k16.3
XM_043219712.1 mRNA upstream 44662 22812274 ~ 22839446 (+) False efr3bb
XM_043220166.1 mRNA downstream 1133 22889804 ~ 22893878 (+) True LOC122325205
XM_043219822.1 mRNA downstream 6336 22895007 ~ 22899921 (+) True LOC122325007
XM_043219824.1 mRNA downstream 12313 22900984 ~ 22906361 (+) True LOC122325009
XM_043219823.1 mRNA downstream 18853 22907524 ~ 22914772 (+) True LOC122325008
XM_043219825.1 mRNA downstream 26645 22915316 ~ 22917280 (+) True dusp23a
TU208163 other upstream 366433 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 407334 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 1039407 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 1685489 21168775 ~ 21198619 (+) False ipo13b
XR_006247313.1 other upstream 1744310 21139684 ~ 21139798 (+) True LOC122325571
unassigned_transcript_2513 other downstream 211535 23100206 ~ 23100288 (+) True trnal-cag_35
TU208810 other downstream 1184200 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 1184200 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 1184200 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 1551572 24440243 ~ 24493381 (+) True G141524

Expression Profile