RNA id: XM_043220173.1


Basic Information

Item Value
RNA id XM_043220173.1
length 3841
RNA type mRNA
GC content 0.50
exon number 10
gene id si:ch211-278j3.3
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 10871839 ~ 10888227 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTATAAatgggtaataaaaaaaagatgcataaaCGACGCAAAAGCTGCTTGTTGTCGTTTTCCGAGGCAGAGGTCGTTGTCAGGTACCGTTTCGTTCCTGAAATGTGTTTCGTGTAAGTGATTGCAGCACATGGACGGAGAGGCTCTCCGGCAGCAGAGGAGGGAACCTCGAGGTTCAGGGGATCTCCTCGCCAACGTCACGCGGCGAGTCTCGGACCAGAAAAACGCCGAAAGACGAGCAAACGGGCGACGTTTTACAGCAGTGGGAGGAGCCGAGAGAGCTCGCGAGTCCTCAGCCGCTCGGTGGGAGGAGCCGAGCGCTGGTGCTGAGCTGATAACGCACTGAGCGGAGggATGAACATTTGCGGCGCTTTTGGATAACcgaaggaaaagaaaacatttcatgtGAGAAGAAAACAAGGATGACCTTGATCAGGGAACTCTGTTGTGGACAGTTTTCGTACTTTCTCACAATGGCCTCTTTGCCGATGTTCAGCGTCAGACCGTAAGCAACtaacagagacacacaaacaaaagggGCCCGATCCGCTCATGCTGTTTTGGCTGGACTGTCCAGCTCTGTACAATGAAGAGACCGAAGCAGCAGTCACAGTCCCTCAGTTTTCTCAGCTTCTTCAGCCGAAAGCCCAAATCCGACCCCAGGATTGAGAAGCCCACCGGGACTTTGAACAAGGAGGAAGTGGCCATCACTCTCACGCCCAATGAGCATGAGCATGTGGAACAAGAGCGGGCTCACGGTGATGTTGGATTAGAGGGCGGCAAGGATGCAGGAGATCCTGGGAAAGGTGACGGAGGTGGAGTGGGAGAAGATGAGGGAGGAGCGGAGTGTGGGAGCAGTGGCTCAATGGGAGTACTGTCCTTGTCCTCCTCCAGTCAGGAGCAGCTGCTGGAGCACCTGGTCGAGTGCCCGCTCTGCCTCCTGAGTCAACCGCGCGGACACTTCCCTCGCCTGTCCTCCTGCCAGCATCGTGCCTGCACCGACTGTTTGCGCCAATACCTACGCATCGAGATCTCAGAGAGCCGCGTGGGCATCGCCTGCCCGCAGTGCCCCGAAGCTCTGGCTCTTCCCGATGTCCGTGCCATCCTGGATGACGGCGCACTGCTGGAGCGCTTCGAAGAGTTTCAGCTGCGCCGCTTTTTGGCTGCTGACCCAGACACGCGCTGGTGCCCGGCGCCAGATTGCAGCTACGCAGTGATAGCTTACGGCTGTGCCGAATGCCCCAAACTGAGCTGTGGTCGGGAAGGCTGTGAAACCGAGTTCTGCTACCACTGCCGGCAGCTGTGGCACCCGGACCAGACATGTGACCAAGCCAGGCGTCAGCGCGCTCGCCACACGTCAGGAGCCAATGATGTTTCCACGCTCTACGTCTTCAACGAGGAGCCTGGTGATGCAGAGGAGATCAAGCCCTGTCCACGTTGCGGTGCCTACATCATGAAGACTAATGATGGCAGCTgcaacagaatgaactgtacagTGTGCGCTTGTCAGTTCTGTTGGCTGTGCATGCAGGAGATCACTGATGTGCACTacctcagTCCCTCAGGCTGCACGTTCTGGGGAAAAAAGCCATGGTCGCAGACCCGCAAGGTTTTGTGGCAGGTTGGCATGCTGCTCGGGGCTCCGGTGGTGATCTCACTTATAGCGGGCATTGCGATACCAGTCATCATTGTGGGCATCCCGATTTATATGGGCCGCAAGGTTCATGGTCGCTGTAAGAAAAACAATATCTCAGGAAGTAAACATTATCTGACAGTGGCCAGTGGGGTCATGatgtctgtttttgtgtctCCAGTCATAGCAGCCATTACTGTGGGGGTTGGGGTGCCTCTTATGTTGACGTACGTCTACGGGGTCGTGCCCATGTCGTTGTGTCGTAATGGCTGGTGCAGGCCACAAACTGAACCTCCTGATGTGCGCAACATACAGCTGGAAGATCTGGCCAACTTCAGTGATCACTGGACCGGCCAGCCCAACTCAGCTCTATCCGACGGAAGTGTACAGGAAGTGAGCGTGAATGTGGAGGAAGTGATGCCGCTTCCCAGCACCAGTGTGGTCCAATCTGGAGCAAAGGGCTCAGCTGAACCTCCTAATGACGGACAGGTCGACCACACTGAGCAGGTCGTTCGGTCAGACGATGTGGATGTAGTTGAGGAGTGTGCCTTCAGCAGCACGCAAACATTTGCCCTGAGCAGGGAAGGCACTAATATTGAGGTCCGTGTGGAGATCGAGGCCCAGCCACGGGACGGCCGGAAGCCGAGTCTCAGCAGCGTTCTGTCCAGCAAGAGCCTGTCGGCAGAATCGCTCAGCCAGTCCCGTGAACCTCTGTGTGCCTCTCAACAGACAGGGAGCGCCGACCCCGTGCCAGTTCCCGAGATAGACAGCGTCTGAGCAAATCCTGGCGAACCACTGCTTCCACAGCCCACCTACACTCCCGGCGGGTGCTTCCAGCCTCTGCCTGCAAACACAGAGAGcgtgaaagaaaaaagagagggagggatgaGGATGAGAGGCCAGGGCTGCTGCCAAAATGCCACGGAGGGGATTAAAGACGATCGTATAAACTCAGATGACCAAGCGCATGTTTGTCAACGAGTTTGAGGAGTGCTAATCAATTTTATACTGTGTTCTATAGGAAACATTGCCTATTTGGATGCTGGtctgtttaatttattcaattagCTTTTCTTTTAGCTGTACCCTTTTATCTGATGACCGTATGGTTCGTGTCCCCGGGCTTATTCGTcggtaaaaaaggaaaaagcattAAACTACGGATTAATAGCATGGTTAATTCTGCCACAGTTGCTAGCCTGACATGTCGTGCGACTAGCAACGTGGTGAAATGCGGTACTTGTACTGCAGGCTAATGCTAACTTGGCTTATGGGCTTTTCCCTCGtggtattcattcatttgaattatgcaatattattttacataacgGTCGCATTTTCAAGTAAAATCTGTGGGATTTTGGTCTAGAATTAGTCTTCAGCATTATGCTGCTTTTaatgtgtgaccctggaccacataACCATTTGTAGGGATAGTCAACAACACAGCTTATGGGTggaaattatagatttttctttaatgctaaaaatcattaggatattaagtgaagatcgtgttccatgaagacaagatttgtacatttcctaccatgaatatatcaaaacgtagtttttgattagtgatatgcattgcaaaaaaaactttaaaggacATTTTCTCAATGTTTAGGTATTTTTGCACCAGATTCCAGATCTCAGACAAATAtcgtcctatcctaacaaaccatacatcaatggaaagcttattaaATTCACCTTTCTCAATTTCAACAAATCAACCCTTTTGACTTGtcttgtggtccagggtcacattatGTCCTGATTATGATCATCTGTTTCCCTCTGTTCACTTGTAGATTTTCATTTCTTCGgtaaaggttttgttttgagTACATAAGAGGTTAAAAGCCCATTAACTAAAGAGAGCACCTTATTTCAAACATCTACACTGACTTCCGCTTACTAAGTAATGCCTTGTATTGCTACCACAGAGCCAACAGTTTAGTATAGACTACTGGTATTTTTGACATTTAGTATCAATGGAGGAACTCAGAATGCTAGATCAGGCCTCTAATACGAACTTTTACCccctgttattattttaaaaaatgagcaTCAGACAGCCCTGTATAAAAGTGCAAAAGACCTCCAGGAGTTTCCAAAGCTGAAACTTCATAGCTGCACTGCAGATTGGAAACAATGAATGGAACAGTATGTCAATAAAAAAGATTTGTATTGAATGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203205 lncRNA downstream 65059 10806521 ~ 10806780 (-) True G137588
TU203194 lncRNA downstream 85504 10785953 ~ 10786335 (-) True G137578
TU203189 lncRNA downstream 92433 10779130 ~ 10779406 (-) True G137573
TU203172 lncRNA downstream 117648 10753957 ~ 10754191 (-) True G137560
TU203171 lncRNA downstream 118581 10752847 ~ 10753258 (-) True G137559
XR_006247258.1 lncRNA upstream 46719 10934946 ~ 10937374 (-) True LOC122325152
XR_006247259.1 lncRNA upstream 46719 10934946 ~ 10937350 (-) False LOC122325152
XR_006247254.1 lncRNA upstream 225569 11113796 ~ 11114925 (-) True LOC122325111
TU203241 lncRNA upstream 225664 11113891 ~ 11114833 (-) False LOC122325111
TU203252 lncRNA upstream 303432 11191659 ~ 11194847 (-) True G137621
XM_043219946.1 mRNA downstream 1104 10839146 ~ 10870735 (-) False si:dkey-71h2.2
XM_043219947.1 mRNA downstream 1104 10842859 ~ 10870735 (-) False si:dkey-71h2.2
XM_043219948.1 mRNA downstream 1106 10839146 ~ 10870733 (-) True si:dkey-71h2.2
XM_043219945.1 mRNA downstream 1107 10839146 ~ 10870732 (-) False si:dkey-71h2.2
XM_043219277.1 mRNA downstream 172407 10649046 ~ 10699432 (-) True xkr6b
XM_043219462.1 mRNA upstream 7761 10895988 ~ 10922882 (-) False snx17
XM_043219461.1 mRNA upstream 7761 10895988 ~ 10922882 (-) True snx17
XM_043219460.1 mRNA upstream 7761 10895988 ~ 10922879 (-) False snx17
XM_043219459.1 mRNA upstream 7761 10895988 ~ 10922879 (-) False snx17
XM_043219454.1 mRNA upstream 37236 10925463 ~ 10932315 (-) False eif2b4
TU203048 other downstream 147770 10721921 ~ 10724069 (-) True G137469
TU203003 other downstream 301102 10567297 ~ 10570737 (-) True G137451
TU202840 other downstream 932962 9937965 ~ 9938877 (-) True G137330
XR_006247224.1 other downstream 1536778 9330137 ~ 9335061 (-) False pcsk9
XR_006247227.1 other downstream 1592874 9265372 ~ 9278965 (-) True bloc1s2
unassigned_transcript_2506 other upstream 44335 10932562 ~ 10932644 (-) True trnal-cag_34
TU203246 other upstream 244399 11132626 ~ 11136588 (-) False LOC122324412
TU203250 other upstream 286967 11175194 ~ 11182169 (-) False LOC122325476
XR_006247255.1 other upstream 478696 11366923 ~ 11368490 (-) False gsx2
XR_006247367.1 other upstream 740901 11629128 ~ 11629249 (-) True LOC122325628

Expression Profile