RNA id: XM_043220181.1


Basic Information

Item Value
RNA id XM_043220181.1
length 1011
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC122325217
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21910401 ~ 21911411 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGATGTCCAAATCAACATTAGCCAAAATGGAATCTGGGAAAAGCATTTTCTATGTTATGAGTTTAGTAACATGTCTTGTCAGAGATTTATCTATCCTTTGGAAACCCGAATATTGCTCTACATCCTTTTCAGCATCTCATCAATTGTCACAATCCTAGGAAACCTGCTTGTGATCATAACGGTTATTCACTTCAAGCAGCTTCACACACCGACTAACTACCTCATCCTGTCTCTGGCCGTGGCCGATCTGCTTGTTGGAGGAGTTGTGATGCCTCCCAGCATGCTGCGCTCCATCGAGACGTGCTGGTATCTGGGAGATTTGTTCTGTAAAATACACAGCAGTCTTGATGTGACATTGTGCACCGCATCTATTTTAAACCTGTGTATCATTTCTCTGGACAGATACTATGCCATATGTTACCCCTTTCAATATCACAGTAAAATGACATCTCTTGCTACACTAGttatgattattatctgctGGACTGTTTCAGCTGCTCTGGGGTTTGGCATGATCTTCATGGAGCTTAATATTCTGGGAATTGAggatttttattatgaaaatgttgaCTGTGATGGAAAATGCTTAGTATTTCAGAGCAGAGAGGCAGCTACTGTAATGTCATTGGCTTGTTTTTATGTTCCTGCTTTTGTCATGCTCTGTGTGTATCTTAAGATCTTACACGCAGCTCAACTGCAGGTTCAGGCCATTCAGAGTGTgaattctgaatttaaaaaagagGGGAAAGCCACTAAGACTTTAGCCATTGTCATGGGGGTGTTTCTGACCTTCTGGATAcccttttttatttgcaatctTCTTGATCCCTACATTGGTTACTCTGTACCACCACTGCTGTTTGACTTGTTCCTGTGGGTTGGATATTATAATTCCACCTGTAATCCCATAGTGTACGCCTTCTTTTACAGCTGGTTCAGACATGCTTTCAGAGTCATTCTGTCTGGAAGAATATTTCAGAGTAATTCTTCAAGAACAATGTTATTGTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208004 lncRNA upstream 1068 21908974 ~ 21909333 (+) True G140900
TU207864 lncRNA upstream 57280 21850862 ~ 21853121 (+) True G140794
TU207862 lncRNA upstream 60266 21849762 ~ 21850135 (+) True G140792
TU207858 lncRNA upstream 63380 21846814 ~ 21847021 (+) True G140788
TU207856 lncRNA upstream 64948 21844833 ~ 21845453 (+) True G140786
TU208009 lncRNA downstream 22573 21933984 ~ 21978548 (+) True G140905
TU208011 lncRNA downstream 56287 21967698 ~ 21969950 (+) True G140907
TU208038 lncRNA downstream 149652 22061063 ~ 22061533 (+) True G140922
TU208050 lncRNA downstream 186500 22097911 ~ 22098292 (+) True G140931
XR_006247169.1 lncRNA downstream 186994 22098405 ~ 22114861 (+) True LOC122324401
XM_043220075.1 mRNA upstream 9573 21899772 ~ 21900828 (+) True LOC122325159
XM_043220154.1 mRNA upstream 12440 21896951 ~ 21897961 (+) True taar10a
XM_043220545.1 mRNA upstream 19207 21890151 ~ 21891194 (+) True taar10
XM_043220582.1 mRNA upstream 86282 21817203 ~ 21824119 (+) True bmf2
XM_043218883.1 mRNA upstream 116258 21787959 ~ 21794143 (+) True rmdn3
XM_043220067.1 mRNA downstream 3232 21914643 ~ 21915653 (+) True LOC122325154
XM_043220062.1 mRNA downstream 8884 21920295 ~ 21922335 (+) True taar1b
XM_043220346.1 mRNA downstream 12745 21924156 ~ 21925178 (+) True LOC122325331
XM_043220383.1 mRNA downstream 15285 21926696 ~ 21927715 (+) True LOC122325361
XM_043220469.1 mRNA downstream 19916 21931327 ~ 21932340 (+) True LOC122325420
TU207855 other upstream 65700 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 711782 21168775 ~ 21198619 (+) False ipo13b
XR_006247313.1 other upstream 770603 21139684 ~ 21139798 (+) True LOC122325571
XR_006247327.1 other upstream 771273 21139014 ~ 21139128 (+) True LOC122325586
XR_006247312.1 other upstream 772636 21137649 ~ 21137765 (+) True LOC122325570
XR_006247241.1 other downstream 560375 22471786 ~ 22476774 (+) False ubxn2a
TU208163 other downstream 595356 22506767 ~ 22517675 (+) False fkbp1b
unassigned_transcript_2513 other downstream 1188795 23100206 ~ 23100288 (+) True trnal-cag_35
TU208810 other downstream 2161460 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 2161460 24072871 ~ 24074423 (+) False G141475