RNA id: XM_043220182.1


Basic Information

Item Value
RNA id XM_043220182.1
length 2574
RNA type mRNA
GC content 0.45
exon number 1
gene id sox11b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15519210 ~ 15521783 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAGTCGGTAACTTTGAAAAGAGGTTTGTCTTAGAGTGCGGCAGCTGCGAGTCTATCAAGGGAGAAAAGTATCTTTGACCATGGTGCAACAGACGGAGCACAGCGAGACGGAGAGCAGCATGTCGCGAGAGACCACAGACACCGAGGAGAACGAACTGATGGCGTGCAGCCCGGTGCCACCGAAACCGGACTGGTGCAAGACAGCCACCGGCCACATTAAACGACCCATGAATGCCTTTATGGTGTGGTCCAAGATCGAGAGGAGAAAAATCATGGAACAGTCACCGGACATGCACAATGCCGAGATCTCCAAAAGACTGGGGAAGCGGTGGAAAATGCTGAAGGACAGCGAAAAGATTCCCTTTATCCGCGAAGCCGAGCGGCTCCGGCTCCAACACATGGCTGACTACCCAGACTACAAATACAGACCGAAGAAAAAACCAAAGCTCGACACAAGTTCTTCGAAACCAGCGGTGCAGTCGCCGGAGAAGATCGGCAAAAGTGTCAAAGCTGCAGGGAAGAAGTGCGCGAAACTCAAGCCGAGCAAACCGGGAAACATTACCGCCAGAGCGTCTTCGCAAGACTGCAGGTTCAACTATGTTTTCACAAACTTAAAAGTGACCAAGTCTATCAAAAGGGAACTTACTGACGACGAAgatgacgacgacgacgacgacgacgaggAGGACGACTACGAGGAAGAGGAGCACGTCAGGCTGCACAACGTCCCCGCGAGCCCCACGCTGAGCTCCGCCGCGGAGTCCGAGGGCGCCAGCATGTACGAGGAGTCCAGGCACGCGAGCGCGGTTCCCGGCAGCAGACTGTTTTACAACTTCAAGAACATTACCAAGCAGAGCGCAGCTTACCCTGCCTCGGTGTCACCAGCATCCTCTTTCAGGTCCGTCTCTTCTTCGTCCAGCAGCTCCAGCGAGGACTCCGATGACTTGCTGGTAGACTTCAGTTTGAACTTAGCGGCGGGCTCTCACTCGACGGACTTGGGCAACACTTCAGGAAACCTTTGTCTCTCTCTGGTGGATAAAGATTTGGACTCTTTCAGCGAGGGCAGCCTCGGTTCTCACTTCGAGTTCCCGGACTATTGCACCCCCGAGCTCAGTGAGATGATTGCGGGAGACTGGCTGGAGGCGAACTTTTCAGACCTGGTTTTCACTTACTAACTGACGAACTCCTCCAGAACCAAGGAGGCATCTCGCATCTTCAGGTTATTTTTTGACTCTGCCTCCGTGGATGTCCCGGTTAAGACGGCGGAACCTGCGTTACGAGATTTGTaacgtagaaaaaaaaagtgacatggTCAACATTGacagtgctgtgtgtgtatggCAAGCGCTTTTAACATGTATTCCTTAAAACTACATAGCTTCTACTTTTATCTgacaagcagtttttttttatccttgtaAGCCAttagttggtgttttttgttttagttttgtttttttcagttcactgtGAATTTTATGTCTTTGCTGCTAGTCACTATGCCAGTAGTAAAAAGAAACCGTTCCATTTCAAAAGGTACTAGTGTAGGATAATGACTAGGAGGAATGATGTGCATATAAATGATTGATTACTAGTGAAACTGAGATGCTAACCACTATTAACTCACTTACtagtaattaaaataagtgCTAGTCACATGAAAATAGATTCCAGTTAGTTTAAGGCAATAAATGTTAAAGTAGCTTGCCATAGTGTGTGGTTATTCTGTGGGGTTGCAGTGAAACTGCTTAAACTATGGTGGAGcgcaaaatgtaaaatctgaaCTATGCATTCCCATCCCACCCATATCTCTACAGGGAGCTGGTAAACGGTTGCTGGACCGAATGGAGGCAGTTCTGAAACACTGTTCAGGATGGAACTTTTTCTGAGGTCTTATGTAATTTCTTTACGccacaaatgtttcttttttttgtgtgtaaccGGTTCCGTTTCCCTCCAAGTACGGGAATATTTAAGCAGATAACCACTCTAGAACACACAGGTATGGCAGGAAGCATTTTGATACATGACCAACATAcctcatctttttaaaaaaaaaaagtaaaatattttctggCATATTTTTGTACAGTTAAAGGGAATGTTCTTACTGTGCTTTAAGTGAGGTTTCTTCAGGCACTTCAACCCGGTTTCATTTGTAAAAGCATGCAAGAATTAAACTGAGAAGTCGACTTGCATTTAAATGCCTGGTTATTATTTTACTCGAGGCAAATGTACAGCTGTAGATCTGAAGCGTTTCTATAGGGAAGTGTACAATGGAATTGGGGGAACACATGAGCCTCATTTCTGGTACTAGATTGAAGATTGTATATGTTCTGTAATATAGTAAAGCTAGGAGTTTATGTATATCTGTGTGAATGGGTCCCAAATAGCAGGTGTAAAACtggattttgttttgcttttttatttttatcataatggcacatttgtttttcattattttgtgcaatataCTCTCAAAATGGACCATCTGCGTTTTGTAGCAAAGGAAATGAGTTACATGTCGTCATGCTGAAGTCTGTATCTGACACAAATAAATCAGCTGGAACTGA

Function

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0009611 response to wounding biological_process

KEGG:

id description
K09268 SOX11_12; transcription factor SOX11/12 (SOX group C)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204996 lncRNA downstream 2140 15516843 ~ 15517070 (-) True G138853
TU204970 lncRNA downstream 138241 15370608 ~ 15380969 (-) True G138828
TU204944 lncRNA downstream 171929 15331801 ~ 15347281 (-) True G138811
TU204946 lncRNA downstream 194930 15323572 ~ 15324280 (-) True G138812
TU204880 lncRNA downstream 516021 14997143 ~ 15003189 (-) False max
TU205007 lncRNA upstream 162393 15684176 ~ 15711053 (-) True G138862
TU205116 lncRNA upstream 295137 15816920 ~ 16190659 (-) True G138922
TU205130 lncRNA upstream 470760 15992543 ~ 15993096 (-) False LOC122325494
TU205173 lncRNA upstream 685287 16207070 ~ 16208001 (-) True G138956
TU205179 lncRNA upstream 692561 16214344 ~ 16216716 (-) True G138960
XM_043219875.1 mRNA downstream 67199 15438737 ~ 15452011 (-) True rnf144ab
XM_043219877.1 mRNA downstream 67202 15438738 ~ 15452008 (-) False rnf144ab
XM_043218710.1 mRNA downstream 100441 15416967 ~ 15418769 (-) True id2b
XM_043219479.1 mRNA downstream 149180 15365958 ~ 15370030 (-) True e2f6
XM_043219480.1 mRNA downstream 149182 15365958 ~ 15370028 (-) False e2f6
XM_043220492.1 mRNA upstream 320420 15842203 ~ 15845477 (-) True LOC122325442
XM_043219007.1 mRNA upstream 397801 15919584 ~ 15922857 (-) True LOC122324514
XM_043220533.1 mRNA upstream 468366 15990149 ~ 15993645 (-) True LOC122325494
XM_043219006.1 mRNA upstream 472059 15993842 ~ 16001170 (-) True LOC122324513
XM_043219002.1 mRNA upstream 495535 16017318 ~ 16104722 (-) True LOC122324507
XR_006247368.1 other downstream 228800 15290275 ~ 15290410 (-) True LOC122325630
TU204892 other downstream 504027 14993099 ~ 15015183 (-) True srsf5b
TU204893 other downstream 504027 14993099 ~ 15015183 (-) False srsf5b
TU204531 other downstream 1073366 14443592 ~ 14445844 (-) False LOC122324589
TU204189 other downstream 1827203 13664506 ~ 13692007 (-) True G138285
XR_006247360.1 other upstream 200263 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 200767 15722550 ~ 15722769 (-) True LOC122325623
XR_006247355.1 other upstream 201280 15723063 ~ 15723283 (-) True LOC122325616
XR_006247351.1 other upstream 202227 15724010 ~ 15724230 (-) True LOC122325612
XR_006247350.1 other upstream 320615 15842398 ~ 15842618 (-) True LOC122325611

Expression Profile