RNA id: XM_043220196.1


Basic Information

Item Value
RNA id XM_043220196.1
length 2411
RNA type mRNA
GC content 0.42
exon number 10
gene id ptgs2b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17679203 ~ 17682955 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgATTCATTTTCTGATCTGAACCCGCGAGGAACGACCCAACACATCTACTACTATACGCCACTGGAATGAACAGTTtggtattatttattcttttgcaCCTGGGGTTCATGGTTTGCCAGGGAGCCAACCCCTGTTGCTCTCAGCCGTGTCAGAATCGAGGTGTCTGTACGGCATTGGGCTCGGACTCGTATGAGTGTGACTGTACGCGGACTGGATATTACGGTGAAAACTGCACAACACCCGAGTTTCTCACATGGTTGAAAGTGTCTCTGAAGCCTTCTCCCAACACGGTGCATTATATTCTCACACACTTCAAAAGCCTGTGGAATATCGTCAACAACGTGTCGTTTTTGAGAAACGGCATAATGAAATACGTGCTGACATCTCGCACCCATCTGATTGATAGCCCTCCTATATTCAATGCTGACTATGGTTACAAAAGCTGGGAAGCCTACTCAAATCTCTCCTACTACACTCGCACGCTGCCACCTGTCCCGGACGATTGCCCAACACCTATGGGAGTTGCAGgaaAGAAAGAGCTGCCAGATGTGAAGCTTCTGGCCGAGAAGCTGCTTCTCAGGAGGAAGTTCATCCCGGACCCTCAACGCACCAGTCTTATGTTCGCTTTCTTCGCCCAACATTTTACACACCAGTTCTTTAAAACCGACATGAAGAAAGGTCCAGCCTTCACAAGAGCCCTGAATCACGGGGTTAACTTGGGACACATATATGGTGAGGACCTTGAACGCCAACACAAGCTGAGACTTTTCAAGGATGGCAAGCTGAGATATCAGGTTCTGGATGGTGAGGTTTATCCTCCGGTAGTCAGTGAGGTTCAAGTAGACATGCACTACCCTCCTCATGTACCTGAGTCCCATCGTTTTGCCGTTGGTCACGAAGCCTTTGGTCTGGTTCCTGGACTCATGATGTATGCCACTATCTGGCTGCGTGAACACAACCGAGTGTGTGATGTACTAAAACAGGAGCATTCTGACTGGGATGACGAGAGGCTGTTTCAGACCACAAGGCTTATTCTTATTGGCGAGACTATCAAGATTGTCATTGAAGATTATGTGCAACATCTCAGTGGATACCACTTTAAGCTCAAGTTTGATCCTGAACTTCTCTTCAGCGAGCGTTTCCAGTACCAGAACAGGATCTCTTCTGAGTTCAACACTCTTTACCACTGGCACCCCCTTATGCCTGATGAATTTCATGTCCAGGATGAAGTCTACAATTATAAGCAGTTTCTCTTCAACACGTCTATACTGACAGACTATGGCGTCAACAGCTTGGTTGAGTCCTTCACCAAACAGATTGCTGGAAGGGTGGCTGGAGGGCGTAATGTTGCACCAGCTGTGTTAAGGGTGGCCATAAAGTCGATTGAAGACAGCAGGCAAATGCGATACCAATCCATCAATGCCTACAGGAAACGTTTCAACATGAAGCCATACAAATCCTTTGAAGAAATGACAGgagAAAAGGAGATGGCTGCTGATCTTGAAGAGTTATACGGGGATGTGGATGCTGTGGAGCTTTATGCTGGGCTGCTGGTTGAGAAGCCCAGGCTCAATGGCATTTTTGGGGAGACCATGGTAGAAATGGGTGCCCCCTACTCCCTCAAAGGACTTATGGGAAATCCCATTTGTTCCCCCGAGTACTGGAAACCGAGTACCTTTGGTGGCAAAGTGGGCTTTGAAATTGTCAATACAGCCTCTCTTCAGAAATTGGTTTGCAATAATGTCAAAGGGCCCTGCCCCATGGCGTCCTTCAACGTGCCTAATGTAAAAGATTCAGTACCAACCACCATTAATGCAAGTACTTCCCACTCGGATCAAAACGTCAACCCAACAGTTTTGCTGAAAGAACGGACATCTGAACTTTGATAGATGTATTTTGCTagaaagttatttattatttatttatttataggttatttattttatttattgtaccaagaaatgtgtattttaattaatatttttgtatttttgaatgatttttgtaaaaatctgatgctttgtttttaacactatttattaaatatgtacattgtatgtgttgtaaaaaatgtttacattagaCCTCAGATTTTAGCACTGATATATGTTGAATAGTTTATCATGATTTTACTTGAATCTCGTTTCTAGTTGtttacaatgttaaaatgttttatcttgtgttgtttgtttacgtctgccttttttcttcctttgttTCTTTCAATCCTTGTAATGAAACATCTCAAGATCTCAGAATACtaatcaaaagtttttttcGAATGAAATATCTCACACTGTTTTGTCTTTGTGAACACGTTTTATCTAAAAAGTATTgaattgtttcttatttttatacttGAAATATGACCTTcgaaaataataaatcacaataagTCTAATACTTTTA

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K11987 PTGS2, COX2; prostaglandin-endoperoxide synthase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205819 lncRNA downstream 62695 17615793 ~ 17616508 (-) True G139387
TU205818 lncRNA downstream 63504 17615148 ~ 17615699 (-) True G139386
XR_006247201.1 lncRNA downstream 119733 17555855 ~ 17559470 (-) False LOC122324574
TU206133 lncRNA upstream 106243 17789198 ~ 17794072 (-) True G139565
TU206135 lncRNA upstream 112529 17795484 ~ 17799866 (-) False G139567
TU206136 lncRNA upstream 112529 17795484 ~ 17799866 (-) False G139567
TU206137 lncRNA upstream 112529 17795484 ~ 17799866 (-) False G139567
TU206138 lncRNA upstream 112529 17795484 ~ 17799866 (-) True G139567
XM_043220197.1 mRNA downstream 12837 17663502 ~ 17666366 (-) True pdcb
XM_043218994.1 mRNA downstream 17139 17644978 ~ 17662064 (-) True tprb
XM_043219323.1 mRNA downstream 43347 17629431 ~ 17635856 (-) True scyl3
XM_043219097.1 mRNA downstream 70258 17603658 ~ 17608945 (-) True LOC122324568
XM_043220343.1 mRNA upstream 21963 17704918 ~ 17772741 (-) True hmcn1
XM_043219502.1 mRNA upstream 118711 17801666 ~ 17824200 (-) False swt1
XM_043219501.1 mRNA upstream 118711 17801666 ~ 17824200 (-) False swt1
XM_043219500.1 mRNA upstream 118711 17801666 ~ 17824200 (-) True swt1
XM_043219503.1 mRNA upstream 123174 17806129 ~ 17824201 (-) False swt1
TU205714 other downstream 251132 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 251132 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1216987 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1312431 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1313736 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 127319 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 660517 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 723072 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 723799 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1393091 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile