RNA id: XM_043220238.1


Basic Information

Item Value
RNA id XM_043220238.1
length 3674
RNA type mRNA
GC content 0.46
exon number 20
gene id lpin1b
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21640329 ~ 21655564 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCCTCTCATAAACATGCTGAAACACAGATCTGCTCTCTGATCATCTGCAGTTATTTCTCATTTCGGCTAACAACTTCtgcaatatttgcatattaaaatctCTACTTTATATGTAAACTGGTTCTAAGAAGATTGAGATCGTAACCGCTGCCATGCAGGGAGAGGATGAGAGGGATGAGGACGAAAATGGAAGTGACCTAAAATTTGAGAGTGGAAAAGAGGCCATCGACTCCAGCTGGTCTTGGACTCAGACCATGAATTACGTGGGTCAGCTGGCAGGGCAGGTGTTCGTGCAGGTGAAGGAGCTCTACAGAGGTCTGAATCCCGCCACGCTGTCCGGCTGCATCGATGTCATCGTCATCCGGCAGCCCGATGGAGCCCTGGTCTGCTCTCCATTTCACGTACGCTTCGGAAAGATGGGCGTCCTGAGATCCCGAGAGAAAGTGGTGGACATTGAGATCAATGGGGAACCTGTGGACCTACACATGAAGTTGGGCGAGAACGGAGAAGCGTTCTTTGTCAAAGAGACAGAAGACGATCAGGAAATGGTTCCATCTTACCTGGCCACATCTCCCATCCCATCTGATGGTGGGCTTCTGATGGGCTCCAGCAGTGAGAATGGACtaatgaagaagaggaggaaaaggagAAGGAAGTGTAGGATGGAGGATGTGAAGAGGGAGGAGAGCGTGGAGTTCTCAGAGGAAGAGCTGTTCAACATCGACATCGATGGCAGTGAACAGCCCGATCAGAACAGAGATCTGATGAATGGCGGTTCATCCactggaaacaaacaaaacacagttcATGCTCGTTCAGATGGAGAGTGGAGTCCTGTTCACAGTCCTAATGTGTCTCGTCCCTGCACTCCTAAAAGTGACTCCGAGCTGCTTAAAGATCAACAGGAGTATTCGGCCATGTTGTGGTCCTGGGGCGAGTTACCTCAAGCCGCTATGCCATCGTTTCTGTCATCGAAACCCAACGTCCTGCCTGCGTGCCCACTGTCAATCCCGGTCTCTGACAACACACATTTCAGAGTCATCCCTGACACGGACGTCCATGGCCACGACAGAAACAGGACATTACCTTCTGGCGGCCAATCGAACGGAGCGGCTTGCGTGATGTCATCGTTGGAGGAGGGAGGAACCAATAATGGAGGCCGCCCACAAAATAAGACTGATTCCCCTTCTAAAAGAAAAGATAAGAAAAGCCACCATTTGGGTTCTGACGGCGTGTATTTGGACGACATAAAAGATCTGGAGCCAGAAGTGGCGGCACTTTACTTTCCTAAAAGtGGTTCGGAGCGTTGTGGTGAGAACGGCCCTCGCAGTGTGACGGTGTCTCCTCAGTCCATGTGCAGCTCGGGAGCGGACAGCGGCGTGGACAGCTACGACCTGCCCTCTATGTCCATCTCTCTGTGTGGAGGACTCGCGGAAAACAGAGAGATCACTAAAGAACATTTCCAGCAGAAGTCTGTGTCATTTCAGCAGTTTGCAGATAATCCATCCATCATTGATGACCCTAATCTGGTGGTGAAGATCGGCTCTAAGTATTATAACTGGAGCACCGCTGCTCCTATTATGTTAGCTATGCAAGTCTTCCAGAAACCATTGCCTAAGGCCACCGTAGAGAGACTTATGAAGGAGAAGATGCCCAGAAACCGAGGAAGATGGTGGTTTTCATGGCGAGGAAGAACAAACAGCACCAAACCGGATTCAGTCTCGGGTGGTTCAGCATGTCCTGCAGGAGACGAGGCTATCAAGAACAGGCGCTCAGACGAATCCTCCTCCAGCGATGAAGACTTAACTGCCAAACAAACCCCCGTCCCTGTTCACGCAGACCCCGCCCCTGCGGGAGGGGGCGTGTCCTATCAGAAAACGCTCCGCCTCTCTTCAGAACAGCTAGTCAGTCTGCAGCTCAAGGACGGGCCTAATGACGTGATGTTTAGTGTGACCACTCAGTATCAGGGCACGTGTCGCTGTGAGGGAACCATCTACCTGTGGAACTGGGATGATAAAATCATCATATCAGACATCGATGGCACAATCACCAGATCAGATAAGCTGGGGCACATTCTGCCCACGCTGGGTAAAGACTGGACCCATCAGGGCATCGCTAGCCTGTATCACAACATCAGCCAGAATGGGTATAAGTTTCTGTACTGCTCGGCGAGGGCGATCGGCATGGCTGACATGACGAGGGGTTACCTGCACTGGGTCAATGAGAGAGGAACAATGCTACCACAAGGACCTGTTTTACTGAGTCCCAGCAGCCTGCTATCAGCCCTGCACAGGGAGGTGATTGAGAAAAGGCCAGAGAAGTTTAAGGTGGCGTGTTTGACAGACATTAAGAATCTGTTCCTCCCAAACACAGAGCCCTTCTATGCAGCGTTTGGGAACAGAGACACCGATGTGTTTTCCTATAAGGAGGTGGGAGTTTCTTTAAACAGAATCTTCACTGTTAACCCTAAAGGAGAACTGATCCAGGAACATGCCAAGACCAACATCTCATCGTACGTGCGTCTCGGTGAGGTGGTGGACCACGTCTTCCCGCTCCTGAAGCGCAGAGGTTCCTGTGATTTCCCCTGCAGTGATACCTTCAGCCAGTTCACCTTCTGGAGAGAACAGCTCCCTCTCGTGGACGGACAGATGGCCAACGCCAGTCGCTGATCACCTCACTTTAACCGCACAGAATACGGAAAGACACAGGCTGAAAACCAAAACTAGTGCAACTGTACGAACATCACACAGAAAAAGTGGATCTGGACCTCCAAAAAACTGCACTTTCTTGGAAAGAAGTCTTCACATTTGAGTTTTGATTTAGAGTATAATGGTAGcagatttatataaaaatgagccCGGATAATGGacatattttgactttttcagttttgcttGTAGCGATCACAAGCTTTCGTGTTGCTGTTACTATATTAATGCAAAGCAAGAACAATCCCATCACGTCAGGATAGCTACTGTCAAATTTCAACAAATAATTAGTATTTGTTAAAAGTCAGAGAGAATGAAACTGAATAATGTTACACATGAATGCATAAggcatttatacaaacatttttttttgcacactgtGACAATCaaacacttttttgttgttgttgcatttaGGGTAAAGTAAGTTTAAATTTGCATAGGCTAAATATACTTTGTTTTCTTGCAAAATATGACcaagaaatgtaattttctgaGATTTACTCATTTATTCTCAGAATTTTGAATGGAGTATTAAgtcatattatttttgtcttatcaCATCATATCATATTTTGAAATTCCTGCCTTCATGTGTCTTTACCCAGCACTTTATGTTACTGAAGAAAAATATactgtcatattttttataCGACTTGATAATCATAATCCTGTTTTGGTTTAGTCCATTTTAAAGTGGGTTTcagttatttgcatatttaatatctGAGACAGACTCAGTTTAAACATATGCTAAACCTGTAGCATGATGTTgttgatataattttttgtttgatttgccttgttttgctttttattaaaaatgattttcagtcaTTAGTTCCCAAGAAAGACATGATTGTATTGACAAAGGTGTTTGGTTTTCTGGTATTCTTTCAGTGAAAGAGCGGTAGATCAGATTCTCATGGGTTTtggttttcaataaaacataacatcaaATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207906 lncRNA downstream 71969 21567633 ~ 21568360 (-) True G140826
TU207896 lncRNA downstream 88098 21549084 ~ 21552231 (-) True G140817
XR_006247240.1 lncRNA downstream 127846 21507244 ~ 21512483 (-) True LOC122324936
TU207879 lncRNA downstream 134687 21497304 ~ 21505642 (-) False lin28b
TU207882 lncRNA downstream 157029 21482618 ~ 21483300 (-) True G140808
TU207881 lncRNA upstream 42856 21698420 ~ 21699275 (-) True G140807
TU207947 lncRNA upstream 72089 21727653 ~ 21768597 (-) False G140859
TU207948 lncRNA upstream 72089 21727653 ~ 21768597 (-) False G140859
TU207946 lncRNA upstream 111385 21766949 ~ 21768597 (-) True G140859
TU207872 lncRNA upstream 115466 21771030 ~ 21774369 (-) True G140801
XM_043220050.1 mRNA downstream 783 21630270 ~ 21639546 (-) True gnpat2
XM_043219388.1 mRNA downstream 109883 21516779 ~ 21530446 (-) True rab10
XM_043219715.1 mRNA downstream 134674 21483592 ~ 21505655 (-) False lin28b
XM_043219714.1 mRNA downstream 134769 21483592 ~ 21505560 (-) True lin28b
XM_043219127.1 mRNA downstream 325002 21305710 ~ 21315327 (-) True hadhaa
XM_043220185.1 mRNA upstream 34854 21690418 ~ 21697694 (-) True fez2b
XM_043220184.1 mRNA upstream 34854 21690418 ~ 21697693 (-) False fez2b
XM_043219767.1 mRNA upstream 43842 21699406 ~ 21713062 (-) True wdr26b
XM_043219768.1 mRNA upstream 43842 21699406 ~ 21712655 (-) False wdr26b
XM_043219766.1 mRNA upstream 57920 21713484 ~ 21730228 (-) False LOC122324966
TU207887 other downstream 127976 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 361588 21198710 ~ 21278741 (-) True G140616
TU207486 other downstream 664579 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 1577352 20061602 ~ 20062977 (-) True G140277
TU207100 other downstream 1581830 20057624 ~ 20058499 (-) False G140227
TU207950 other upstream 76982 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 185549 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 190242 21845806 ~ 21846917 (-) False LOC122325102
TU208103 other upstream 457038 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 459474 22115038 ~ 22115120 (-) True trnal-uaa_36

Expression Profile