RNA id: XM_043220258.1


Basic Information

Item Value
RNA id XM_043220258.1
length 2702
RNA type mRNA
GC content 0.44
exon number 3
gene id myoc
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 8251452 ~ 8257991 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGCCTGGACTCAGAGAAACTGCCTCTAGACCTGAAGACACAAACTGTGGGATCGCAGGCATCAAAGCGAAACATCAACCACCAATCAAAGCGAGAAGCTCCAATCAGTCCCTCAACCAAGAGGAAGTCAGTGGGAACGGAAGATTGAATAGGCTCAGGTGAGAGGTCATTAGTGGAACGCAAGAGAAGTGAGCTGCTCCGGTTACACTTGTGAGGTAAAAGGGAAGGAATAGATTAGTGCTGGAGCTAAAGAAGACAGGGCAGTAGACTCACCACCACCTTCCCTGCAGAAAGAACATCagataaagacagaaagaagtTTTTTTGGGTATCTGTGGTCCAGCTGAACATGTGGTTTTTGGCTGTGTTTTGGGCTTCCTGCCTGCTGATGGGCACCCATGCTCAGAGTAGCACCAGTTTTCGCCGGGCGAATACCGGTAGTGGTCGTTGCCAGTACACCTTCACGGTGGACAGCCCCACAGAGGCAAGTTGTCCATCAGCAGGTTCAAGTCCCGAGATGGAGGCCCTGAAATCTCGCCTGGGGCTGTTAGAGGCACTGGTTGCCCGCCTCGTAGGAGGGGAAGCCGTGCCAGAGTTGTCACAGGGCTCCAGACCTCAGTCAGGCCTCCAGGATGCATATAACCAGATGATGGGGGAGAACACCCAGCTTCAGAGAGAGAAGCAAAAACTGGACAGACAGGTCCAGGACCTGCAGCAGAGGATGGAAGAGCTGCGCCAGGAGGCTGAGAGGTTGAGGAGCAGACCCTGCATGCAACAACCTCCTCCAAGAGTGCCCCAAAATGACAACAGCTTCAGACCAGGATCAGATCCTTCATGGCATTATGAGAATCCTGGATACCAGGAGCTGACGGCTGTAGTCACCGAGGTTTCTGCCCCAAGTCCGGAAGGTCCAGCGGACATCTCAGGTTGTGGCGATCTCGTGTGGGTACAAGAGCCTGAGGTGCACCGCAAGGCTGACAACATTGCTGGTAAATACGGCGTCTGGATGCAAGACCCAGAAGCTAAAGAACCTTACGGTACAGAGATGGTGTGGCGCATTGATGCCGTAGGTTCTGAAGTGCGTCAACTCTTCGGCTATGAAAACATGGACCAGCTGTCACGTGGCTTCCCCACTAAAGTCCTCCTCTTGCCAGAATTTATGGAGAGCACAGGCGCCACCATGTACAGAGGCTCCTTGTACTACCAACGGAGGCTCAGCCGCACCCTTGTAAGATACGATCTACTCTCTGAGAATATTGCTGCCCGCCGTGATCTTCCCCATGCTGGCTTCCATGGCCAATTCCCCTACTCTTGGGGAGGCTACACAGACATCGACTTGGCAATAGATGAGAACGGTCTATGGGCCATTTACAGCACCAACAAAGCCAAGGGTGCTATCGTCATCTCCCAGCTAGACCCTCACAACCTAGAGGTGAAGGGCACCTGGGAGACAAAAATCCGCAAGACATCCGTGGCTAATTCTTTTATGATCTGTGGCAAGCTGTACACTGTTGCTAGTTATACCTCACCAAACACCACCATAAATTACATGTATGACACCGCAACTAGCCAAGGTAAAACAATCGCAGTGCCATTCAAAAACCGCTATCGCTATAACAGCATGGTAGACTATAACCCAGCGCAGAGAAAGCTATATGCTTGGGATAACTTTTACATGGTATCTTATAATGTGAGATTAGGCAAGCAGGAGTAAAGTGAAGACAATGTAAATTTCTATATCACCCAGCTTATAGATGTGTATTGTAATGTTGTGATATTTTACCATCCGGAGGGATAGGTATTGTTGGATTTACTGGAATTTAAGACGAGGATAGACAACTGGACAAGAAATCAACTATAATTATGCTGATGACATTATTCCTAGCACCAGCAGTAggtatatataatgaataaagcaaatataacattttcctGACCATATTCAAGCACAAAGACTTCTTTGTAGACTTATTTTCAAGACAGATAGTAAATATACAACTGACTACACTGCACAtcttcacattaaaaaaatatttttgcatcttTAAATGCTATAAAAGATATTCCTTTGACTAATAAATTCCAAAATGGATAAACTATAGAGTATATCAGGTTTTTGAGGCCACATTTACGTCCTCTGATTTTGTCCACATAACATGTTAATAGAGAAATTATTTTTCTACCTTTTTAAGTATGTCtcgtctttttttgtgtttacggcactgagaaaaaaaaaaattcaagggGGAAAATATAATAGCATACAATTTATTACAGTAGGACTGCCTCTTGATTGATTTTCCAGAGGTATGCAActttaaaccaaaaaaactttGCTTGTTATGTTCATGCTCTAATCCATACATAATCATGCTATCGCAACTCTGTATATGTTGAACATTTTCCCTTCTCTTTTGAATTTGCCTCAAGACTTGTGTGCTGCTTGAGATGTTAAGTTTGGAATCTTAAGTGTATTAacttatatgaaaataaaaatttaaagtgtcggtttttcttgttttcctgCAATGCAGTGGTATTTTGATCAactcaaaaccaaaaacaccAACCACTGCTCATTTTTAcagcatattattttattagtttctgTAACCAAACCAGGAGAATGTAAATAAGAccttacatattttaatacagCGATTTAACCCCTGtacaagtaaaacaaaaacagaaatcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202250 lncRNA downstream 43508 8202900 ~ 8207944 (-) True G136909
XR_006247275.1 lncRNA downstream 68793 8153665 ~ 8182659 (-) False LOC122325257
XR_006247276.1 lncRNA downstream 68793 8153665 ~ 8182659 (-) True LOC122325257
TU202090 lncRNA downstream 338888 7912148 ~ 7912564 (-) True G136804
TU202062 lncRNA downstream 358127 7890258 ~ 7893325 (-) True G136792
TU202280 lncRNA upstream 3092 8261083 ~ 8261292 (-) True G136935
XR_006247279.1 lncRNA upstream 53500 8311491 ~ 8313967 (-) True LOC122325283
TU202295 lncRNA upstream 72482 8330473 ~ 8334855 (-) False pigc
TU202294 lncRNA upstream 72624 8330615 ~ 8334855 (-) False pigc
TU202327 lncRNA upstream 117494 8375485 ~ 8376716 (-) True G136962
XM_043220007.1 mRNA downstream 116421 8130352 ~ 8135031 (-) True prdx6
XM_043219113.1 mRNA downstream 250921 7998591 ~ 8000531 (-) True jun
XM_043219112.1 mRNA downstream 255014 7992597 ~ 7996438 (-) True LOC122324580
XM_043219116.1 mRNA downstream 259143 7985891 ~ 7992309 (-) False si:dkey-86e18.1
XM_043219115.1 mRNA downstream 259143 7986809 ~ 7992309 (-) True si:dkey-86e18.1
XM_043220262.1 mRNA upstream 3767 8261758 ~ 8271223 (-) True vamp4
XM_043220261.1 mRNA upstream 26051 8284042 ~ 8287245 (-) True itpa
XM_043220259.1 mRNA upstream 73914 8331905 ~ 8333751 (-) False pigc
XM_043220260.1 mRNA upstream 78616 8336607 ~ 8340950 (-) True tmed5
XM_043219561.1 mRNA upstream 144808 8402799 ~ 8408257 (-) True LOC122324856
TU202009 other downstream 555387 7693955 ~ 7696065 (-) True G136754
XR_006247193.1 other downstream 649850 7590578 ~ 7601602 (-) False LOC122324530
XR_006247310.1 other downstream 711212 7540125 ~ 7540240 (-) True LOC122325568
TU201966 other downstream 815098 7433232 ~ 7436354 (-) False LOC122325222
TU201941 other downstream 822184 7426669 ~ 7429268 (-) False LOC122325546
TU202297 other upstream 65122 8323113 ~ 8644759 (-) False pigc
TU202296 other upstream 73776 8331767 ~ 8644759 (-) False pigc
TU202293 other upstream 123503 8381494 ~ 8644759 (-) True pigc
TU202479 other upstream 560863 8818854 ~ 8819327 (-) True G137054
TU202481 other upstream 563163 8821154 ~ 8821719 (-) True G137056

Expression Profile