RNA id: XM_043220268.1


Basic Information

Item Value
RNA id XM_043220268.1
length 3419
RNA type mRNA
GC content 0.46
exon number 23
gene id ttc13
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5034349 ~ 5052435 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTCATAACATTACTCACAACATGGCACCTGCTGGCGGGGGTGTTGTGCTGGTGGCTCTGTCGCTACTGTACTTATGTGGAGCTATTTTATCCAGCGAGTATTTCTCCACcttgactttattcaacagcGACCTTCACAAGCACGGCTGCAGCTCTCCGGCCGAGTGGGAGGAGTATGCGGCGGACTGCGAGTCGGCAATCCTGCAGCTGGAGGATCCGGACTGTGAGGAGGGGAGCAACCCGCCCTGCGAGTCCATCTTTTCACTCAATGCAGAGAAAATCCTCAATCAGGCGAAGTTGTTTGTCGAACAGCGTCGGTTTCCTTTCGCTGTGGAAAACCAAAACACCAATGAAGAACTCGCCATTGGCTATGTTCTGATTGGGAACGGCCTGTACGATGAAGCTATCAAGCACTTCTCGTTACTGCTGCAGGGAGATCCTGAGCTGGTCAGTGCCATCTATGGACGGGGAATAGCTTACGGCAAAAAGAGTCTGCAGgaCATAAAGAACGCAGACTTGGCTCTCTATGAGCTGAGCAGAGTGATCGCCCTGGAGCCCAGCAGACCTGAAGTGTATGAGCAGAGGGCAGAGATTCTGTCTCCTCTGGGCCGCATCAGTGAAGCTCTGTCTGATCTGACCAAAGCCATACAGCTGCAGCCTTCAGCCCGGCTCTACAGACACAGAGGAACGCTGCTCTTCATATCAGAGGATTATATGGCAGCCATGGAGGATTTCCAGCAGTCTCTAGAGCTGAAGAAGAACCAGCCCATCGCTATGCTCTATAAAGGCCTGACTTTCTTCCACAGGGGCCTCCTTAagGAGGCTATAGAGGTGTTTAAAGAAGCTCTCAAACTGAAGTCAGACTTCATAGATGCGTATAAAAGCTTGGGTCAGGCTTACAGggagTTGGGTGATTTTGAGAATGCTATGGAGAGCTTCCAGAAAGCTCTGTTACTGGATCAAAACCACATCCAGTCTCTCCAGCTCAGAGGAATGATGCTGTACCATCATGGCAGCCTGCAGGAGGCCATCGGCAActttaagAGATGTCTGCAGCTGGAGCCCTATAATGAAGTGTGTCAGTACATGAAGGGTCTCAGTCACGTGGCCATGGGCCAGTTCTACGAGGGCATCAAAGCTCAGACTAAAGTCATGCTCAACGACCCTCTCTTGGGACAGAAAGCCAGCTCTGAGTATCTCAAAGTCAAATATCTCAGAGAATACTCCCGTTATTTACACTCTCATCTGGATGTACCGGTTGCGGAGTATAACGTTGATCAGGATTTGCCTGGAAACTTTAAAAACCACTGGGCAAAAAATCTCCCCTTCCTCATCGAGGACTATGAAGAACAGCCTGGACTTCAGCCTCATATTAAAGATGTTCTACCTCAGAACTTTGACAGTTACTCTGCTGAAGTTCAGAAGCTGATCTGTACGGCGGATCACATCGGTGCACTGATGCAGTACGACACGTCAGGCTTCTTATCAAACCTCAGAATACACAGAGcGATGGGCTTGGCCACCATAGAGGTGATGCAGGCCATGCAGCGCACCTGGAGTAACTCGAAGGTTCGAGTCAACGGAAAGACCAGACAGCTGCAGTGGAGAGACATGTTTGACATCGCAGTGAAATGGAGAAGgatTGCAGATCCAGACCAGCCTGTGCTGTGGTTGGATCAGATGCCTGCCAGGAGTCTTAGCAGAGGATTTAACAACCACATTAACCTCATCAGAGGCCAGATTATTAATATCAGATATCTGGAGTATTTCAGTAGTATTCTTAGTTTTGTAAAGGAAAGAATACTGGTTTATCATGGGGCGTATAACCCTCGGGGGCTTCAGGAAGTAAAGCAGGCTCTGGAAAATGTGAATAAAGTGGAGGATCTGCTGCCCATCATGAAGTTCAACAGTAAAACCAGAGACGGCTTCACGGTCAACTCTAAAGTGCCCAGTATGAAGGATCCTGGGAAAGAATACGACGGGttcaccatcaccatcaccGGAGATCGAGTGGGGAACATGCTGTTTTCGGTGGAGACTCAGACCACAGATGAGAGGACGCAGCAGTATCAGTCAGAAATTGAAGCGCTCTATAAAGATCTCACGGCCAAAGGCAAAACCCTGATGCTCTCCACTGAACTCGGGGACGCAGATGCTGTGTGTAATTTAATTCTCTCTCTGGTGTATTACTTCTGTAACCTCATGCCACTGTCTAGAGGCTCCAGCGTCGTGGCATACTCCGTGGTCATGGGAGCTCTGATGGCCAGCGGGAAAGAGGTGCTGGGCCGGATCCCGTCTGGAAAGCTGTTCGATTTCGAAGCCATGACTACAGCGAGCCCCGATCGCTTCAGTAAGACCGTCAAGAGTTGGATGAGCTTAAAGAGTTTGCCGAGCTGGTACCAAAACCTCCCGTCGGTTTCAGAGACGTTCCAGTTAACGAGGACCATGATTGAAGTTCTAAACACAGACTCGTCTTCGCACTGTCCCAAGAAATCCTGAACTTGAAACACCACggatatatttaaaacacaaagggCCATCTCTACTCAGGGCATCTTTGCTCACAGTCTTTACTTTTACATGGTTTTTACGTATCGAACATCAGAACAAGTTCTCTTTGATTTTAGCTTTTGCTTTCCACAAATATGGGGAAGAGAGTCGActctttattaaaattttaaattagaatttggGGTTGCCCTTTATCAACCAAAGTTCAGCAATTGCAAGCATAATCTGAGTTGGAAAGACAGCAGGACATGTAGCagaatataattgaataatattatttgttcGTTGCGTTTCATTGATTCTTtcgctgtttttaattaaattgctgACTTGTTGCAGAGATGTCCTTTGAAGAGTTTATTAAGCAATATTCTGCAGCTCTGAGTTCCTTTCTGAATACTTGAACACAGTAGGGAAATAcgtttggaaatgtttttggtttttttgaaaGACAGAAGTTGGTAATATTGCCATGTTCATTGTCCACACTGGCTTCTTTATCACTTTTGTTGTCTCTATTTAATGGCTCAGCTGAATAATGTGCGATTAGATTCTGGAGATGTTCACGTGACCTTAAACACTGGGAACAGTTGCGCCTCAATCTATAGTGACTCGAAtcaagaaaaagtcatatttttcgTTAATCTTATAcatctttgattttattttatgttctcAAGGGACCATTTTAAGTAGAATTTCAGTTTTCTTCTTCCTGTTGGTGCTTTTTGGCAAAGacttatttcctttattttcccataaaaaagtatgaaaaacagtGGGGGTGTTTTTCCATGAAGGGAAAATAAAGGAGGGTTCTTtaacgcacaaaaaaaaacttgaaagtGGAAAATCTGTGACTTAATTTGCTGGAACAGCCACAGTCAATAAAAGCAGTTGAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201134 lncRNA downstream 545 5033599 ~ 5033804 (-) True G136176
TU201132 lncRNA downstream 15483 5018361 ~ 5018866 (-) True G136175
TU201129 lncRNA downstream 15635 5018361 ~ 5018714 (-) False G136175
TU200965 lncRNA downstream 297543 4736549 ~ 4736806 (-) True G136069
TU200890 lncRNA downstream 588146 4445773 ~ 4446203 (-) True G136012
TU201141 lncRNA upstream 38865 5091300 ~ 5097061 (-) True G136180
TU201152 lncRNA upstream 59738 5112173 ~ 5119766 (-) True G136188
TU201376 lncRNA upstream 599864 5652299 ~ 5652925 (-) True G136350
TU201394 lncRNA upstream 648746 5701181 ~ 5701475 (-) True G136356
TU201429 lncRNA upstream 807518 5859953 ~ 5860623 (-) True G136368
XM_043219177.1 mRNA downstream 4782 5024806 ~ 5029567 (-) False selenol
XM_043219176.1 mRNA downstream 4782 5024806 ~ 5029567 (-) False selenol
XM_043220156.1 mRNA downstream 21769 5011381 ~ 5012580 (-) True si:ch73-111k22.3
XM_043219514.1 mRNA downstream 23790 4973048 ~ 5010559 (-) True LOC122324828
XM_043219770.1 mRNA downstream 67568 4928863 ~ 4966781 (-) False LOC122324969
XM_043220233.1 mRNA upstream 8272 5060707 ~ 5064427 (-) True fam89a
XM_043219356.1 mRNA upstream 14180 5066615 ~ 5072155 (-) True sprtn
XM_043219644.1 mRNA upstream 63413 5115848 ~ 5121484 (-) True c20h1orf131
XM_043218830.1 mRNA upstream 108771 5161206 ~ 5360069 (-) True LOC122324433
XM_043220488.1 mRNA upstream 323518 5375953 ~ 5385180 (-) True ints7
TU201117 other downstream 4817 5024806 ~ 5029532 (-) False selenol
TU201118 other downstream 4817 5024806 ~ 5029532 (-) False selenol
TU201119 other downstream 4817 5024806 ~ 5029532 (-) True selenol
TU201127 other downstream 21908 5011476 ~ 5012441 (-) False si:ch73-111k22.3
TU200901 other downstream 461347 4564385 ~ 4573002 (-) False LOC122324820
TU201137 other upstream 118090 5170525 ~ 5284548 (-) False LOC122324433
unassigned_transcript_2445 other upstream 489842 5542277 ~ 5542388 (-) True trnal-caa_1
unassigned_transcript_2446 other upstream 490855 5543290 ~ 5543401 (-) True trnal-caa_2
unassigned_transcript_2447 other upstream 491871 5544306 ~ 5544417 (-) True trnal-caa_3
unassigned_transcript_2448 other upstream 492887 5545322 ~ 5545433 (-) True trnal-caa_4

Expression Profile