RNA id: XM_043220354.1


Basic Information

Item Value
RNA id XM_043220354.1
length 1705
RNA type mRNA
GC content 0.40
exon number 2
gene id grem1a
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15276107 ~ 15278071 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGCCCCGTTCTCTTAAATGTCAGCACTCAGAACAGAGCTGCAGAACTTATTTAGACTCTGACTCTGGAGTTCTGGATCATCTGGTTCAACCTATTAATCGTAGTTTGTTATGGTACACAAAGACCTTTGTGAACGCAGCTGCAGTCCATGAGAAGAAGTTCGAACCATTATTAATCTGAGGATGACTAAAGACGCATTAGCTGTCACTGTCGTGGTCTTGTGGCTGCTCTGCAATCCGGCGAGGATCAGGGGAACCGGGGGATTTCAAGGCGCCATTCCTCACCCAAATAAATACAGCCCAAACCAGTCGGAACAGTCACCGCAGACGCCGCAGGCCGGTTCCAGGGGAACGGGACCGCCTTCGGTCGGGGACGAGGTGCTGGACTCCAGCCAGGAGGCTTTACACGTAACGGAGCGCCGTTACCTCAAACTCGACTGGTGTAAAACGCAGCCGCTGAAACTGATGATCTACGAGGACGGGTGCCAGCCGCGCACCATCATCAACCGCTTTTGTTACGGACAGTGCAACTCATTCTACATCCCTCGGCACGTTTATCAAGAGGACAGTGCGTTTCAGTCGTGCTCCGTGTGTAAGCCGAAGAGCTTCACTACCGTTACTTACACGCTCTACTGTCCAGGACAGACTCCCAGCACGAAGAAGAAGCGCGTGCGCCGCGTCAAACAGTGCCGCTGTACTTCTGTGGACTTGGATTAAACTCGCGGATTTCTTTCTTTGTCGGCTACTCCTAAAAGTCGCAAATTCATATACCTGAATAACGTGGGAGAATAACGATTCGTTTCCTCCGCCTCTGTATTGTGAAGACGTACAATTGACGCAAATGAAATGTGTTATAAGTTATAATACTATGAAATAgtgacatattaaaaatatgcttatattattatattattctccACTGTGTGGAGCAGGATTTGCGCATCGATGCAAATAGCTTATTTTGTGGCTTGATTTTTATTGTAGGATTGCATATTAGGCTATGGATGTAAATAATTTCCATTCCATCATTTGTTTCTGGTCTTTATGCcatattgaaatgtaaaaaagaatgTGGTGCCTTTTTAATCACTTGATGAAGAAAATCTAGGCGAACAAAcattacagaaaacaaataaaatgcatgtttttatatatttttttttttacaatgttggGTTTATTATAAAAGGAACATTATTACTGTGATTAAATGGCAATACGAAGTGATGAAGCCACATAACTGtcatcaataaaaatatgtgcTGTTCATCCAAATAAAACTAATAGGGtagtttaatattatattatttcacatttacattgtcattgttttttatcATTGTCATTTAATATGAACATAAAAAGTTACTCAACTTTGCTACtctttatacaaaataaagttacTGCCTTTTTCAAAGTCAAATGTTGAGACTGCTTTTTCAACCCTTAATTGTTTAGACTGGTGAAAATCCCAGAACAGATTGagctaaatataaacatttcttaaatgtttCTCATTTGAGCAGCATTTTTAtctgaaacatgtttttttggtGAGCCATTGGTTGTTGGATTATACATTGGAATGGGATCATTATACTGACAGACAGGTTATCATCTTCTATCTCTGCAGTCTTGAGTAAAAACTATCAGACAAACAGGTGCACCTTAATCTAACCCTGCCAAAAATACAAGTGCGTGGGtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204880 lncRNA downstream 272918 14997143 ~ 15003189 (-) False max
TU204882 lncRNA downstream 272918 14997143 ~ 15003189 (-) True max
XR_006247215.1 lncRNA downstream 432371 14839057 ~ 14843736 (-) True LOC122324712
TU204663 lncRNA downstream 482398 14793495 ~ 14793709 (-) True G138627
TU204596 lncRNA downstream 697206 14578701 ~ 14578901 (-) True G138579
TU204946 lncRNA upstream 45501 15323572 ~ 15324280 (-) True G138812
TU204944 lncRNA upstream 53730 15331801 ~ 15347281 (-) True G138811
TU204970 lncRNA upstream 92537 15370608 ~ 15380969 (-) True G138828
TU204996 lncRNA upstream 238772 15516843 ~ 15517070 (-) True G138853
TU205007 lncRNA upstream 406105 15684176 ~ 15711053 (-) True G138862
XM_043219957.1 mRNA downstream 23482 15185712 ~ 15252625 (-) False ryr3
XM_043219956.1 mRNA downstream 23482 15185712 ~ 15252625 (-) False ryr3
XM_043219954.1 mRNA downstream 23482 15185712 ~ 15252625 (-) True ryr3
XM_043219958.1 mRNA downstream 100693 15166406 ~ 15175414 (-) True chrm5b
XM_043219438.1 mRNA downstream 186534 15078974 ~ 15089573 (-) True thbs1b
XM_043220353.1 mRNA upstream 147 15278218 ~ 15280428 (-) True LOC122325338
XM_043220336.1 mRNA upstream 2931 15281002 ~ 15284293 (-) True actc1a
XM_043218576.1 mRNA upstream 10700 15288771 ~ 15292255 (-) True LOC122324271
XM_043218591.1 mRNA upstream 16447 15294518 ~ 15297908 (-) True klf11a
XM_043220515.1 mRNA upstream 24735 15302806 ~ 15307283 (-) True taf1b
TU204892 other downstream 260924 14993099 ~ 15015183 (-) True srsf5b
TU204893 other downstream 260924 14993099 ~ 15015183 (-) False srsf5b
TU204531 other downstream 830263 14443592 ~ 14445844 (-) False LOC122324589
TU204189 other downstream 1584100 13664506 ~ 13692007 (-) True G138285
XR_006247291.1 other downstream 1839756 13425475 ~ 13436351 (-) False cracd
XR_006247368.1 other upstream 12204 15290275 ~ 15290410 (-) True LOC122325630
XR_006247360.1 other upstream 443975 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 444479 15722550 ~ 15722769 (-) True LOC122325623
XR_006247355.1 other upstream 444992 15723063 ~ 15723283 (-) True LOC122325616
XR_006247351.1 other upstream 445939 15724010 ~ 15724230 (-) True LOC122325612

Expression Profile