RNA id: XM_043220366.1


Basic Information

Item Value
RNA id XM_043220366.1
length 4745
RNA type mRNA
GC content 0.41
exon number 5
gene id clvs2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20596263 ~ 20616215 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTGATGACGGACAGACTGTAACACCGGAGCGATGCTTGAAGTCACTCTCATCAGCAACAAAGCgaagcaacagcagcagcagcagcactgaCGTAAACCATCCACCACATCACCGGAACCATACGGACCGGGACCGACACCATAACGTCTCCTCCGAAGGACGCGCAGGATGGAAACGGAGCGCTGAGAGAGACTGGGATCGTGATGATGCTCGGACTCCAATTCACGGCAACGTTTGAAATGCGCGTTAAATGGAGACTCATGACAAGAGATGCTGCAGGGTGCCGCATTGCCTGGCCGCTTGACGATGGTAGGATAGAGCAGCGCTTTTAACCGTGATGCTCGTTCTCAGATGCTTTTGGGGTGGGATTAGTAGTCGATTGAACGCCTCAGATTTGATCGTACGCAAACTAAGACGATTTCATCCTGCTTAAGCCATACATGCACGCACACGTATACAATCGACGAGCACGACCAgatgaatgtatgtgtatttacgTTGCAGACCAAGCATTAATAAACCCACAATACAGGTGAACTCAGAAGGAGTATATGAGGTGAACTAACAGTGTCGTAGCTTACACTCAGGACCATCTCCAAAGTCAGGTTTTTATTTGCAAGCGCTGCAGTGATAGGGCTCTTTATGATTGGTATTTTCATCACCGGTTACATTGGGAATATATAGTGATATTATACAGAGTACATTGTAGTCAGTTTCGTGCCGGTGCAAGGACAATGACTCATTTACAGGCAGGCCTGTCTCCAGAAACCCTGGAGAAAGCCAAGGTGGAGTTAAAGGAGAACCCCGACACTTTGCATCAGGACATACAGGAGGTGAGGGACATGATCATCACCCGTCCAGACATTGGCTTTCTCAGGACAGACGATGCTTTCATCCTGCGCTTTCTTAGAGCCCGGAAATTTAACCATTTCGAGGCCTTCCGCCTCCTGGCCCAATACTTTGAGTACCGGCAACAGAACCTAGATATGTTCAAGAACCTCAAGGCCACCGATCCGGGGATCAAGCAGGCTCTAAAGGACGGATTTCCTGGGGTTCTGTCCAATTTGGATAGATATGGGAGGAAGATACTGGTTCTGTTTGCCTCAAACTGGGATCAGAGCAGGTACACTTTTGTGGATATTCTGCGAGCTATTTTACTTTCTCTGGAGGCAATGATAGAAGACCCCGAGCTACAAGTAAATGGATTTGTCTTGATCATTGACTGGAGTAACTTCACTTTCAAGCAAGCTTCCAAGTTAACTCCAAGCATGCTGAGATTGGCAATTGAGGGCCTGCAGGATAGCTTTCCAGCAAGGTTTGGAGGGATTCATTTTGTCAATCAACCTTGGTACATCCACGCTTTGTACACAGTCATCCGGCCTTTCCTCAaggacaaaacaagaaaaaggATTTTCATGCATGGAAACAATCTGAACAGCTTGCATCAGCTGATCTTGCCTGAGATTCTGCCGTCTGAGCTTGGTGGCATGCTGCCTCCTTATGACATGGGCACCTGGGCCAGAACGTTGCTGGACCACGCATATGACGAGGAGACGGACTACTGCCCCGAATCCTACACCTTGTCTGTCAAAGACCTGGAGAAAGACCTGTCCCCCAAAACTATGAAGAGGTCTCAGTCCGTGGTGGAACCAGGTGTCCTGAAACGACCAGAAAAAGTGAAAAGCGAAGAAGAAAACATGCAGCCGCTGCTTTCCTGGACTAAAGGCTCTTAATTCCCCAGGCAACGAGGAAACGTCAAGCCCCGTACGCTGGGGAGGAGAGCACCTTGTTCCTATaatgcgagaaaaaaaaaatgtacaaagaaaGGAAATGTTAAAAAGCTAAAGAACACACGAACAGCCTCCAGGAACACTGCAGAGAGCTGCCagttaaaatcatatttttgaagCAAAGAGCTAACGGCGGACGTCCGTATGTAATTGTCAAGTGCCAATTCAAATCTGTAAATACACTTCAGTTCTAGACGTGAGATTGAGGGAGTAATTGTGACATGAACCTGTAAAGACTGCTGTGAATATCCTGTGTGTGCTTCTCGTGATTATTATGTAGAACATGGTACTGTAGGATGGATAATCATGCTTATAAAGATTCACAAGCTTTGGGGTATCCTACATTTATAATCCCCAAATCAGGAGTCGCTCAGGAGTATTTCGAAAGGAACGCATAGAGCTATTGGCGGAGTCAGACAGGCATATGCTACTTCCATTAAAGAAAACACCATCGCCGGTCCAGGTTTCAGTGTTTCACAGCAAATACCCCTTTACGGAGAAAGGATTTTTCTAACGAGCGtttactaatattattttaccaCAACGTAAGCTGTGTTTTCCGTTTAGTATTCTTATATCCCAGAGGGGTTGAGTCACGTTTAAGTAGGCTTTAGCTGATTCTTCACTGATGGCCTTGTTGTTTACACTTTGTCGTAGAGCCGTGGAATATCGCTTTATTTCGTAACCATTTCCATATTAGGCTTATAAGTTGGTTTCCAAGGCATTTGTATCCATACCAAGGACCAGATAGAGTAAAACAAAGTACCGTCTTTGCAGTCTTTCCAACTTCAGAGTCACTGCTTCTgaagttaaagaaatagttcacccaaaaatgagaattttctctttatttactcaccttgcgtcaaaaaaatgtgttattttagtatcgctgagatactattatagtttagtaatattttattaactaaatgaatcgtttaaaaactatatgtgttgatatatttaatatatatgttgcCCATATGTTGACATTTTTCCTTGAAACCTGAAAGGAGAGTTTTGGGAGTTCGGAGCAACACACTCACATGGTGAGTAAGACAGTACGTTCATTTTTGGTTGCTCTATTTCTATTCCtaagtattatttaaagttCTTCAGTATTACAAAAACGGAATTAAACTGTAACACTAACACAGCGGTTGACACAGAGCCATTAAAAGGTGTTGTACAGTGACACATGCTAGTGCATGCTTCCACATGCTTATATCGGTCAGCTTATGGTTTAGATCGTGTGAAAATAGTTTACTCTAAATTATTCAGCTGTTTAATGGAATGCTGTGTTGTCATTAGTCTTTGGCAATAGGATTTTTACAGCGGTTTAGTTTCAAGCCCAAATGAGTGAAATTAAAACTCAGaatttgtcagttttatttcagggattttttttttatttaagtgcgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtatggtacAAGggcaatatacagtacatttaaaatgcataaagtacATACAAATCTTCCAGGCTTCACATTTTTGCTGAGAAACACATCCTCGCTGATTTCAAACAAGCGATACTTCCCAGACAAAAGTTAACGTAAAAATACACAATCAAAGCGTCTAACTTGGCTGAACAGTCCGTAGGAATACTTAAGTTATCTACATGATGTAAAATTCAGCGGCCACCGCTTTccgatttttattttcttatttcatgtaaaattaCAACTCCTCAACTATTACACATGCGCTGTTGAAAACTTGCATATACGCTGAAACGTACAATATGCATTGACGGCatctaatgtaatttttatatgctATATATGTTTGATACGAGGTCATTGATTATATACAAAcagtaatgtattaataattccATGCAGTTAACTTGCATGCGGTTAAGTTGTTTATACATAAAGTTACGTTTTAGATGccgttaatgcattaattatgtaCGTTTCGGTATTgttctgtaaacattttttaaacaaatccctCTTTTCCCATCTGCAGCTTTAAACACAGGCTTAACAAGTCAATCTGTACCAGATTTTCTCCTTGCCACAACAAAATTAggactttttatattttgtggaCAGCTTGTTGTGTTAAGATAGGTGATCTCTGGTTTTTATTTGCTGAAATTAAAGTCAGCCCACTCTCATGACTCACCGGGCTTCAGACATCCAGAGGAGcgaaaaatgtttctaaaaccTTGCTTTATCATCCTGAACAGAAACAGGGAGaacaaaaaagttgaaaattgGCCGTTTTGAATTCGAATGTATTTCCTAGAGAGTAATGTGATGACTTTGGGTTGAGAGAATGGCGTTATGTATAGTCATGATTACATTTCCTCTGTCACGTTTGGATACAATGAGCAGGAAGGCCTCAAAACGATGGTGTAAAttgttacagtatatatttagtagAGCTGTGTTAATGCCATGATCGGTATTTTATTACACcttgaatttatttgtattccTGTATTGTATATGTTTTTGGTCATGCTGCATTATGAACAGCCTTGTTTGTATTTTAGGCAATGGGAATGTTGATCAAATTGTCTTCATTTTTCTAGCCTTGCTTTCTATGGATAATGTACATGTATTGCCATTACAACCAAAGCAACCCTTGGTCAAGGAAACCAACAATTATCCCCAGCTTTTCTAAAGACTACAGGAACAATACATTTGGTATTTCTTTGATTGTTGGCTTATCTTTTCCATATCACTTTGATTGTATAATAGGATGTTAGTGCTGAGAAGCCCATGCAGTATAGAGGTATTATCATGCAGAACAATACATGTGGTTTAAAGGAACATGTTGAATGGAagtaaatatgtgtatatgtcCTTTCAAAATGCTGAGATAAATTATGTAACTGAAACTAAACTgcgaaaggaaaaaaaagcagccaATAAATATTGATATACATAGTTTAAACCTACGAA

Function

GO:

id name namespace
GO:0007040 lysosome organization biological_process
GO:0006810 transport biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0005215 transporter activity molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207301 lncRNA downstream 184402 20410629 ~ 20411861 (-) False nkain2
TU207243 lncRNA downstream 309268 20286480 ~ 20286995 (-) True G140328
TU207225 lncRNA downstream 327997 20266668 ~ 20268266 (-) False G140315
TU207356 lncRNA upstream 10440 20626655 ~ 20626863 (-) True G140413
TU207360 lncRNA upstream 18095 20634310 ~ 20658357 (-) False pkib
TU207404 lncRNA upstream 120373 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA upstream 173691 20789906 ~ 20791701 (-) False G140449
XR_006247242.1 lncRNA upstream 376306 20992521 ~ 20995513 (-) True LOC122324961
XM_043220489.1 mRNA downstream 54014 20410629 ~ 20542249 (-) True nkain2
XM_043220490.1 mRNA downstream 54839 20419402 ~ 20541424 (-) False nkain2
XM_043219209.1 mRNA downstream 189201 20373185 ~ 20407062 (-) False tpd52l1
XM_043219207.1 mRNA downstream 189201 20373210 ~ 20407062 (-) True tpd52l1
XM_043219210.1 mRNA downstream 190166 20373210 ~ 20406097 (-) False tpd52l1
XM_043220374.1 mRNA upstream 10758 20626973 ~ 20632507 (-) True smpdl3a
XM_043220375.1 mRNA upstream 16502 20632717 ~ 20633782 (-) True fabp7b
XM_043218760.1 mRNA upstream 18081 20634296 ~ 20658380 (-) True pkib
XM_043220479.1 mRNA upstream 44796 20661011 ~ 20673120 (-) True cpsf2
XM_043218599.1 mRNA upstream 58782 20674997 ~ 20680821 (-) True riox1
TU207179 other downstream 533286 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 536660 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 537764 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 981061 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1292295 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 357189 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 582495 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 893414 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1116331 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1224898 21841113 ~ 21841468 (-) True G140883

Expression Profile