RNA id: XM_043220369.1


Basic Information

Item Value
RNA id XM_043220369.1
length 974
RNA type mRNA
GC content 0.48
exon number 4
gene id grcc10
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 6043364 ~ 6046192 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCACCCACCGGAAGTGTGCGGGTGTCACAGGAGAGGCTGTGGTTAGGTAGTGGCATCATCGATCAGATACCGACAGTGAATCTCCCCTGTGGAGTGAGCCAGCATGGCCTCTGCACCGGCGCAGCAGCAGCCCACGCTCACTGTAGAGCAGGCGAGAGTGGTTCTCAGTGAGGTGATCCAGGCTTTCTCTGTGCCCGAGAACGCAGCGCGCATGGAGGAAGCCAGAGAAAGCGCCTGCAACGACATGGGCAAGATGCTGCAACTAGTGCTTCCTGTGGCCACTCAGATCCAGCAGGAGGTCATCAAAGCGTACGGCTTCAACAACGAAGGAGAAGGTGTTCTGAAATTCGCTCGGCTGGTGAAGATATACGAGACCCAGGACCCAGAGATTGCAGCCATGTCGGTGAAACTCAAGAGCCTCCTCCTGCCGCCTCTCTCCACTCCTCCCATCGGCAGTGGCATCCCGACCTCGTAGACCGTCTCAAACTCGCAGCTCCAGCGCAGAACCGCTCCAGCCATACAAAGCGCGCGCGCATCCCGGTCTCTCCATCCATTTTAGTCCGTTTGAACGCTTCTTTCGAGAGAGATTTAAACTGAGACGAAGCACGAATTGCACCgcggaaaaaaatattgaaataaaaagaaaacaagttatCGGTGAACTTACACATTCCCATTTTCTGTCAGTGAAACTAGCATTCAAACCATCGTTTTGCTTACATATTGATTTTTTGTGTTCCTATTCATTTTGCCATGTTGAATGCGCATATTTATCAAGCGTGACACTAATTTGTTGATGCCTTTTGAtggtcttgtttgttttttaaggcTTTTTATACAGATTATTCTCTCATTTGGTCATGTAAATCATAACCGACAACCCGTGACGCTGTTCTTGTGATCGTTACTGTTTGAAAAACCCATTAGTGTCACATAAACGGTGTTCAccaataaagacattttgtaatttaa

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201429 lncRNA downstream 182741 5859953 ~ 5860623 (-) True G136368
TU201394 lncRNA downstream 341889 5701181 ~ 5701475 (-) True G136356
TU201376 lncRNA downstream 390439 5652299 ~ 5652925 (-) True G136350
TU201152 lncRNA downstream 923598 5112173 ~ 5119766 (-) True G136188
TU201141 lncRNA downstream 946303 5091300 ~ 5097061 (-) True G136180
TU201458 lncRNA upstream 2810 6048968 ~ 6050633 (-) True G136388
TU201487 lncRNA upstream 82340 6128498 ~ 6145661 (-) True G136398
TU201506 lncRNA upstream 158932 6205090 ~ 6205438 (-) True G136416
TU201549 lncRNA upstream 200105 6246263 ~ 6246891 (-) True G136440
TU201576 lncRNA upstream 228596 6274754 ~ 6278064 (-) False G136460
XM_043219357.1 mRNA downstream 12356 5934497 ~ 6031008 (-) True LOC122324731
XM_043219360.1 mRNA downstream 12356 5934497 ~ 6031008 (-) False LOC122324731
XM_043219359.1 mRNA downstream 12357 5934497 ~ 6031007 (-) False LOC122324731
XM_043219362.1 mRNA downstream 112242 5924066 ~ 5931122 (-) False zpax2
XM_043219361.1 mRNA downstream 112242 5924066 ~ 5931122 (-) True zpax2
XM_043220456.1 mRNA upstream 8363 6054521 ~ 6075953 (-) True ylpm1
XM_043219264.1 mRNA upstream 44526 6090684 ~ 6105516 (-) False syt14b
XM_043219258.1 mRNA upstream 44526 6090684 ~ 6105516 (-) False syt14b
XM_043219260.1 mRNA upstream 44526 6090684 ~ 6105516 (-) False syt14b
XM_043219259.1 mRNA upstream 44526 6090684 ~ 6105516 (-) False syt14b
XR_006247217.1 other downstream 112242 5924475 ~ 5931122 (-) False zpax2
unassigned_transcript_2505 other downstream 216633 5826620 ~ 5826731 (-) True trnal-caa_53
unassigned_transcript_2504 other downstream 217141 5826112 ~ 5826223 (-) True trnal-caa_52
unassigned_transcript_2503 other downstream 217649 5825604 ~ 5825715 (-) True trnal-caa_51
unassigned_transcript_2502 other downstream 218665 5824588 ~ 5824699 (-) True trnal-caa_50
TU201577 other upstream 228596 6274754 ~ 6302976 (-) True G136460
TU201658 other upstream 366321 6412479 ~ 6414013 (-) False si:dkey-63b1.1
TU201662 other upstream 386672 6432830 ~ 6451499 (-) False LOC122324366
TU201897 other upstream 1079590 7125748 ~ 7228963 (-) True G136688
TU201939 other upstream 1250703 7296861 ~ 7305724 (-) True G136707

Expression Profile