RNA id: XM_043220374.1


Basic Information

Item Value
RNA id XM_043220374.1
length 1739
RNA type mRNA
GC content 0.42
exon number 8
gene id smpdl3a
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20626973 ~ 20632507 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAGCGCCgcttgtttttcctgttttggtTTACACGAGCACGGTTTAATAATTCACACAGTCGCAGGAATGGCTTTACCTGTTCTCTTGTGCTTGCTCGGTCATGTTTTTCACCTGCAGGTTTCTGCCGTGCCGGTTAATAATGGCTTCAAACACCTGCAGAGCGCACCTAAATTCTGGCATATCTCGGACCTGCACTTGGATCCGACCTACCATATCACAGAAGACCACACCAAAGTCTGTTTTTCCTCCAAGGGTGTTCCTGCATTGGACCCGGGGGTTTTTGGTGACTTCCTGTGTGATTCCCCATACCAGCTCATTCTCTCAGCATTCAGACACATGAAACAAGCAGACCTGCAGCCTGAGTTCATTATATGGACAGGAGACAGCCCTCCTCATGTCCCGAAAGAAGAACTGTCCACTGATGTAGTGATTGATGTTATTGCCAATATGACTCTCACTATACGTCAGTTCTTCCCACAGCTGCCAGTTTATCCTGCCCTGGGCAACCATGACTACTGGCCACAGGATCAGTTACCAACATCTTCAAATGCCATTTACGATGCTGTAGCCAAACTCTGGTCTCCATGGTTGAACCCAGAAGCTGTAGCTACTTTGCAAAAAGGTGGCTTTTACTCTCTTGTGATCAAACCTGGCCTCCGTCTGGTGAGTCTGAACACAAACCTGTACTACAGTCCTAATCAAGTGACAGCGAATATGACAGACCCCGCTGGGCAGTTCCAGTGGCTGCAGGAAACACTTGAGCTATCAAGACAAAAGCAGGAGAAGGTCTACGTAATCGCTCACGTCCCCATCGGTTACCTACCCTACGCTATAAATACAACAGCCGTCCGAAGGCGCTACAATGAACAACTGGTCAAAATATTTCGCAGCTATAATGACGTCGTTCAGGGTCAATTCTACGGCCACACTCATCGAGACAGCATAATGGTTCTTCTGGATCAACACGGGAAAGCTGTGAACTCTATATTTGTCACACCTGCTGTTACACCTATCAAAAATGTGTTGGAGCCATTTTCGAACAATCCTGGCGTCCGTGCATATCTATACCACCCTGAGAATTATGGTTTACTGGATATTTGGCAGTACTATTTAAATCTCACAGAAGCAAACCTGGAACAGAAGTCAGACTGGAAGCTGGAATACATTATGACTGAGGCTTTTGATATCAATGACGTTCAGCCTCACAACTTGCACAAACTTGCTCGTAGGCTCGAGCAGCCACAGAGCAAAGACTTTGACAAGTATTTTAACCATTTCATGGTGAGCTACAATGTCAGCCTCATATGCGAGGGTTTGTGCAAAGCGATTCAAGTGTGTGCCGTGCAGTTTTTGGATCAAGACACCTACTCACAATGTGTTGCGAAAGCAGGCGTATGAGGTTAAGCTGTTACAGTTCTAGAGTATATACTTGAATTACTCACTTTAAACTTGATCAACTCTCtaaaaagatgattttaaacctttttttgatttaaaagaaatcacAGAACCTAATAATGGAAGAGTTAATCTCAGGAAAACATCTCGCTTCACCCCAAAATTCAAAggagaaaaaaactatttgtattaatttgaaCTCATTTATACAAAGAAAATTAGCAGAATTTAGGACtttaattttctatattttggtctataactttatatttatgaCACCGTTATTAAAgacttaaattataattttcaataagagaaaattttatatatatatatata

Function

GO:

id name namespace
GO:0006685 sphingomyelin catabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004767 sphingomyelin phosphodiesterase activity molecular_function

KEGG:

id description
K01128 SMPDL3; sphingomyelin phosphodiesterase acid-like 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207356 lncRNA downstream 110 20626655 ~ 20626863 (-) True G140413
TU207301 lncRNA downstream 215112 20410629 ~ 20411861 (-) False nkain2
TU207243 lncRNA downstream 339978 20286480 ~ 20286995 (-) True G140328
TU207225 lncRNA downstream 358707 20266668 ~ 20268266 (-) False G140315
TU207360 lncRNA upstream 1803 20634310 ~ 20658357 (-) False pkib
TU207404 lncRNA upstream 104081 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA upstream 157399 20789906 ~ 20791701 (-) False G140449
XR_006247242.1 lncRNA upstream 360014 20992521 ~ 20995513 (-) True LOC122324961
TU207496 lncRNA upstream 363859 20996366 ~ 20996681 (-) True G140522
XM_043220366.1 mRNA downstream 10758 20596263 ~ 20616215 (-) True clvs2
XM_043220489.1 mRNA downstream 84724 20410629 ~ 20542249 (-) True nkain2
XM_043220490.1 mRNA downstream 85549 20419402 ~ 20541424 (-) False nkain2
XM_043219210.1 mRNA downstream 220876 20373210 ~ 20406097 (-) False tpd52l1
XM_043220375.1 mRNA upstream 210 20632717 ~ 20633782 (-) True fabp7b
XM_043218760.1 mRNA upstream 1789 20634296 ~ 20658380 (-) True pkib
XM_043220479.1 mRNA upstream 28504 20661011 ~ 20673120 (-) True cpsf2
XM_043218599.1 mRNA upstream 42490 20674997 ~ 20680821 (-) True riox1
XM_043218860.1 mRNA upstream 74418 20706925 ~ 20718097 (-) True ints9
TU207179 other downstream 563996 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 567370 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 568474 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1011771 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1323005 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 340897 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 566203 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 877122 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1100039 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1208606 21841113 ~ 21841468 (-) True G140883

Expression Profile