RNA id: XM_043220378.1


Basic Information

Item Value
RNA id XM_043220378.1
length 9294
RNA type mRNA
GC content 0.44
exon number 9
gene id hivep2a
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19096279 ~ 19166008 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCACTTTCATCTCTTCCTGAAGCAAAGACGCGCTGCGTTGTACTCCAACACCTGGCGTCCGCGACGCTGTCGTTGCGTCACGAATCGAGCTGAAGCGATATTTTGCGTCGGTCAGAGCTGGAAGCGACAGTGGCGCTTGACACTCTTTCGGAATGTTGCAGACGGATTTGAAAACGTTCTACCGGGTGTGTGAGGAGGGTGTGTACCTGGATTAGATTCCCGGGACCGTCAGGACAAGAAAACCAAACACTGGTGGTCTGCATAATCTCAGCACCCTGGCCAGGGGATCTTACTTGTCACCCCACTGCCCAGCCTTCATCTTCCTAACCTGACTACCATAGAGGAATCAGTGTGAGGCGTTTACCCTGAGAAACAAGCAGATCCCAGACTTGCAAAAGAACCTTTGGATACTGAAACAGAGGACATTAAACAGAAGAGGAACAAGCCTAGatgaaacaaaaagtaaatgGACTGTTGAAATGAGTGATGAAAAGATACTGACCTGATTGTCAAAGAGGGacaatcatttacattttaaagtggaGCAACACTTGAACTATGGAAGCAGAAAGACCTTTTATTTAGGAGTCACTTAAGTAACTCATCTGGCATGACAGCTTTCATGAATGAAATCTAGCAAACAGCTTCAGAAACCCCATTGAAGTACTAGGAAAAATGGAGACACATGAACCTGCCGTTGGCCAAAAATGCACCAAGGAGCAACGGGAAAAGAACCCCTTACAAAGAAAATGGGTCTCTGAGCCCTCTGCTGGAACAAAAAGAAGTACCTTCGGAGATCCAGATGTTAAAAGACACATGCATCGTGAGCAAAGTCTTACAAGTGGGACAAGCCTTGCTAACTCTACACAAAAGTTTAGCTCTGGAAAGCTGATGTCATCTGCAGTGACACACTCATCACAAGAAAGCCAGTTTCAACAGGTCTTCCCTCGGCCTTACTCCTACCAGTTGCCACATTCATACCCGCAGGAGCCTTTCCTTGGTGGTACAAAGCCACAACCTGGGTTAGAGGCCCATGCCTGGTCTTTCTCTGGTCAAATGCAATCTCTGCCACCAGATGATATGTTTCCTGTGCACTCCCGCTCTCACGGAGTATTTCCCCGTCAGAAGTCTCCAGCTGGTTTTGGACAGTTTTCCCAATCTGGATCCGAGCAGCAAGATGAAATTcataaaaaggaacaaaaaccCAAGAAGCCAGGAAAGTACATATGTCACTACTGCGGCAGGGCATGTGCTAAACCCAGTGTGCTTAAAAAACACATACGGTCCCACACAGGGGAGCGTCCTTATCCCTGTGTTCCATGTGGTTTTTCATTCAAAACCAAGAGCAATTTgtataaacacagaaaatcgCATGCTCATGCTATCAAAGCAGGACTTGTTCCATTCTCTGAGTTAGCAACTCGAACAGACACTGATCAAGCATCTTCAGTTGGGGAAGCAGAGGCACACTCTGATGGTGAACAAAGCACTGACACTGATGAAGAAACTGCAGAAGGTGCAATGTTCCCTGAAAAACGTAGCCCACAGATATCATTTGAATCTGACAAGAGCCCAATGGAAAGGGGACCAGCGTACGCAGATCCAGCAGAGGAACTATCCGTGGCATCTATGAAAGTGCCTATCTTAATTGTTCCAAAACAAGGGGTACCATCACCTGCCACAGAGTGTCCCCAGTTTACAGACATCAAAGGTTCAGTTATTGGTGGACAGATGGGCAGAGGAGATGAGTCTCATACAGTCAAAAAGAGACTTGCCTTAAGACTCACTGAGAAAAAGGACCAGGATTCAGAGCAGTCTCAAAATCTCTTGAGCCCCCACAGCAAAGGTAGCACTGATTCTGGTTACTTTTCCCGCTCAGAGAGTGCCGAACAGCAGATCAGTCCACCCAACACCAATGCAAAGACATATGAAGAGATAATGTTTGGAAGAACTTGGTACCACAGAACCAACTCCAGATCTAGACAATCAGTCACAGCTGGGATGGTAGCTATTGTTAGTCAAGACACTAATATCAACAAGCCTAGTGCCATGCAGGAGTTGGCCATGGGAAAGATATCAGAGGGTCATGTTTTTTATCAAAGTGATTGTGCAGAATCACATTTAATTGCTGGATGTGACCCAAAGCATTATCATGCTGGCTCTTGCCAAACTAGCACAGGTCTTCTGGAAGCACCTTCTGATTCAGGGCCACTTATTAGAAGCAACTCAATGCCAACACCTTCTCCAACCAACCTCAATGTACCACCAAGTCTAAGAGGGAGCCACTCATTTGATGAGATGATGACCCAAGATGACGTCTTTTATGGAGGGGCTGCGGGTCTAAAAAGGTTAAGAAGGCAGGCTGCTTTTGAACACTCTGCCCAAGAAGGTCATGGAGAATCAGACAACTATGGCAAAATCACAGGTCTAAATTCAAATTTGAAAATGGGGGGTCCTTTGATGCCAGAATTTAAAGGCTCTGGGTCAGAGATGGCTTGCCCAGAAGTACGCACAGCATATGCTTCATATGATACAAAGGTGGAGTTTACCACAAGAAAAAGACGCATGAAAAAGAGTGTGGGTGAAGAAGAAGATTGCCTTGGACAAGATGATAGTAGTCGAAGTGGCTCTACTGAAATGACAGGGGATTATGATCTAAGACAAGGAAGTCAAGATTCTGCCAAAGCTGCTCCTACTAGTAAGGGTTCCATGTATAGAGCACACAGCCCATCAGACAGTTTTGACAGAGGCTCATGTATGACTCCAGAGGACATTGTACTTGTTCAAGATTCAGACACGAAGACGGCTGGTAATGTAATATCTGTCATTCAACATACGAATTCGCTGAGTAGGCCAAACTCATTTGAGAAGACCGAATCAATTGAACATCCATTTTATCAGCCAGATAAGCATGCTGGACATCTTTCTGAGCAATCGGACTCGGAAAACATTGATGATGTGCAGAGCCCTGATTCTCATCATAGATCAGAAAGCATGGAACATCAGCAGCAGGGTGACAATGAACATGGATCTTTCTCTTCTAATCCACTCTATCATATGCCCCACAAACTTGTACGACAACCCAACATTCAAGTGCCTGAAATACGAGTTACAGAAGAGCCTGACAAACCAGAAAAAGAACCTGAAGTACCAGTAAAAGAACCAGAAAAACATGTTGAGGAATTTCAGTGGCCACAAAGGAGTGAAACATTGTCCCAGCTTCCTGCAGAGAAGCTGCCCCCAAAGAAGAAACGTCTGCGTCTTGCAGATATGGAGCACTCTTCTGGGGAGTCAAGTTTTGAGTCCACTTGTACTAGCCTTTCAAGAAGCCCTAGTCAAGAAAGTAACTTATCGCATAGCTCAAGTTTTTCAATGTCTTTTGATAGAGAGGAAAACATCAAATCTGTATCCCCAACTAAACAAGATGACTTTACTAAACAGTCTGAGTTCTTAACTGTTCCAGGTAGTGGCCATTCTCTGTCTATACCAGGCCATCATCAAAGAGAGATGCGACGCTCATCATCAGAGCAGGCCCCCTGTGCTCTACCCACTGAAGTACCAGAAATACGAAGTAAGTCATTTGATTATGGAAGTCTTTCAACTGGATCAAGACAAGGAGAAGTTTATGCAAGTGCTTCGGCTATGAAGGAGCGTAGACGAGGTTACCTTGTTAGACAGGCATCTCTCAGCGTCTATCCTGAAGTAGTGGTTCAAGAGCCAATCTCAGAGTTCAATATCAAACAAGAGCATTCTGACCATGTTTCTCAAGCTGCTTTAACTGGTGCATCCTATTGTGACTTGGCAAGACCCAGAAGAGGTACACAGTCAGTTCTTGGATCACATCACTTGCTGCAGCAAAGCATCAGTGAAGACAGTCTTTCTGAGGATCATTTCCAGAATGTTCCTCGTTTGCCCGCACAGCTTTCATCAGATAGTGAACATTCAGTGCATGAGCACATGACCCAGGATATAATTCAGCATTCTTCACTTCAGAGCAACCTGCCATCCTCACCTTTCTTGCCATTTCAACCAATGCTCTGGCACCCTGAATCAACACAAAGAAACAAGCAGCATCTGGCATTCCAGGCACAACAACTACAGAAACTACACATCAAACAGCCAAATCTACAGCCCATGCTACAAAAATCATACCAACCTCCTCATCAAATTCAGGTGCAAACAGACTCAAAAACTGATGTTGCAAGTCACAACTATCCATATCCTTCAAGAGCCTCCCCGCAGCAACTTGGAGTCTTGTCATCTAAAGTGCTGACTACAAGCTTCTTGCAACAAGTTCAGCCTATCTTTGCTACTCAAAATGTAGGTTCGCAACCATCACTACCTGGAATGCTGGTACCAGTCAGAATCCAGACAAATGTGCCATCTTATGGTAGTGTAATGTATACAAGTGTTTCACAAATCCTTGTCACTCATTCTCAGAGCACAACTTCTGTCAGAGTTTTATGCACAGACAATGCGTCGACTGTTTCACTAACAGGCACTGCATCAAAGCAACAAGTTGGCATCAATTTATCCAAAATATTAGGACATTCAGAAGGGTCCTTAAATATTCCAATATGGAAAGTACCTGAATATTTACCTGGGAGCCTTAATACGGGAATTCCTTTGTCTTTGACATCAGGAACTATCTCTACTACAGATGCTTCCTCTAGTATTGGGGGGAGTAAGAGAATGTTGTCACCAGCCAGCAGTCTTGAGCTTTTTATTGaaaccaaacaacaaaaacGGGTCAAAGAAGAAAAGATGTATGGCCAGATAGTAAAAGAGCTTAGTGCAGTTGAACTAAGCAATTCCAGTGCACCGAAAGATAAATCCCCCAAACCTGAATTTTCAAAGAGAGATGACTCCATAGATGAACCAGAGAGGATGTCCTCATCTCCACCCACTGATTTCTTGTCATCTAAATTCCTTGGGTACCCATCTGCACCTCGTTTACCTGATGTGCCACCAAAAGACAACTTCATTCCACCCTtgcaaattattacaaatgtgGCTAGCAGAGCAGATTCTCCAGAGGAGCTTGATGTAGATGAATCTACCCCGGAGGCAAGCTCAAGTCCACAATCAGTAATCTCCTCAAGTGATACTCAAGAAGAAACTAAGCAGAACATGGGTAACAAGTTCCCAGTAAACATGCTAGTGCAGCTAGCTGCTAATCAGGGTGGTGGAGTTGTTGGTAACACACTCCTGCTCACTGACCTGGCAGATGTCCATCAGTTTTTTCAATTTCCAAGTCTTCGCACACCAACCAGTGTCAGCTGGTGCTTCCTAAATTATACCAAGCCAAATTACGCACACACAACTCCCCTAACCTCTGTGTATGGTTCTTGGTGCGTCAGCTCTTACAACCCAAACCCACTCAACCTCAGCACCAAGGCCACTTTGGCACTTCTTCGATCAAAACAGAGGAAGAACACAGAAATGTATACAATGGCTGCTATGTATCAACCTGGCACTGGAAAACTTGTTTCGTCTCTCCGGTGGAAACAGAAGTTTGAGCAGTTGAAGCCAGAGATCATACAGTTGGATGTTGGAAAGTTTGGGAAGAAAATGAAGGGAATCAGCTTAAGAGACAGGGGGAAAGAAGACCACGGAGAGAAAGAAGCTTCTTCAAAGCAGACTGAACCCACTCGCATCAAAATCTTTGAAGGAGGgtaCAAATCCAATGAAGACTATGTTTATGTGCGTGGCCGAGGCCGGGGAAAGTACATCTGTGAGGAGTGTGGGATCCGCTGTAAAAAGCCAAGCATGCTGAAGAAACATattcgcacacacacagatgtcaGACCATATGTTTGCAAGTTCTGCAactttgcttttaaaacaaaagGAAACCTCACGAAACACATGAAGTCAAAAGCTCACATGAAAAAGTGCTTAGAACTTGGAGTGTCAGTGACATCAGTGGATGAGACTGAAGCAGAAGAACCAGACACATCTGAGGAGGTCCAAAGAGCATCGGAAAAAATGTCAGAGATAATGGCAGAGCACCAATTTTCTGATGCTGATGATTCAGAGGGTGCTGAAGAGGATGGTGATGAAGTtgatgaagatgacgatgaCGATGATGAGTATGATGGTGATTCAACCCCGAAGACACGGTCCCGAAGCACAAGTCCACAGCCATGTGCCATCCCCTCGCTCTCCATCACTGCAGTCGCTGCTTCACAAGAGTCCACACCAGAGCCTTTGGCCGCTGTCTCCAAACAGCCTCTTTTCACTTATTTCACTAGTCTGCCCAGTATTCAGATTACCCAACTCATGGCACCCAGTGAGAAAGCTGGAGAGGCCCAGATGGCTGAATACCAGAAGCTCCTTCAAGGGGCTCTGGGTGAAGATCACAAAAACAGACTGGATGTGCCTAGCTCTATGGATGAagacctgtctctctctccggACCACAGCTCATCCTCCTTTGACTTCTCCTGCTCCCGTCTGTCTTCACCCGGCTGTGATTCCTCCCCTCTGCGAGAAAGCTCACCTTCCTCCAGGCGATATCTGTCCCCTCGAAGGGACCTCTCACCACGTGGCCGTTTATCACCAAGGCGAGAAGCCTCTCCCCTTAGGCATATCTCCCCCAGGCGGGATGTTTATAGAAGGGATCTGTCACCAAGGAGGGACCTTTCTCCAAGAGGACATCTCTCTCCCATCTCTCAGACAGGACGGCCTACATCCCCAGGAAGGGATCTCTCAGGCAGACTTTCTCCCAGAAGTCGTAGGGGCATGATCAGACCTGTGTCCCCCAGGAGGGGTCTCCACTATCAAAGTGGTCCATGGGCGCACAACCCCAGCCCACACGCAGAGATGATATCATTAAGCCAAAAGACCAAAAGCCATGCAGAGCTGGAGCTGGACCACCGGAAGACATTGCATCTTCAAGGGGAGGCCCGCAATGCAGATGCACCCAATGTCCACCAGGGATTATTTAGCCACCTTCCCCTGCACTCCCAGCAACAGATCCGCACTCCGTTCTCCATGATACCCATTGGTGGCATCCAGATGGTCCATTCTGTGCCCACTTCTGTCACTGGTCATGTCCATCCCACACGCCTTCCCCTTCAGAAGAGCACTTCTGAGGATTCCAGCACCAGCGAGGTGTCCTTCCACCTTCCAGAGGGCCGAGGGCCCACCAGCAGAGGCCCAGAAGACTCCCAAGAATCCCAAGAAAAATCCATGTCCCCCAAGGCTGCGTCACCTTCCTCACAAAAGTCACGAGAGGACAGCGCCGACATGTCCGACAAGGAAAGCAAGCAGGAAGAGTGCATCCAAACGTGCACTAAGGCGATTGCCTCGCTGTGCATTGCCTCTGAAGAAAATCCAGAAAAATCAACTGTTCCAATTGATCCTTACCATCAGCACACATTATCTCATTCGCCCGCAGCTCAGCAAGACTGTGCGGCGAGAGCGCAGCACTACTGCAGCTCAGAGATCAGTCACCCCCTACACTCCAGAGCAGAGAGCAGTGTGTCTGCCACATCAAAGACTCCCACAGCAAGCCATCCCACTCTCTACAACACAGAGACGACAGAGCGAGCGTCTGGCCAACAGGGCCGTGGAGAGAGGCCAGCGACcataaaaaaaggcaaagatTTAAAAGACGCCACTATTAACAACAGGTGAACAAGGTCGAATGGAGAGGGGTAAACTTACGCTcacacattttctattttacacATGTACATCCATGTACACACGGAAAATCAGTCTCAAATTACAAGCTGATTCAGTGGTTTTAATGTACATGTATAGCATGCCTTTTATAACACGGTTTGCTATCTCAACTATAATTACTTTCttatttaaagtttcaaagaatatacatatatataaatatatatgtgttaacTTATATATGAGCCTGACCAAAATTGCTTATGGACTTTGTCtggtacttttaaaaaatgtacagatgTGTGTgccttttctttactttttgcttATATTCTTATAAGCATTAAACAGGaagacatgtaaatatatatcgAGTTTTGTGTATCCCGCtttgtaataaatgcaatttaccGTCTTTTTGGACACTTTGGGTCTGAATGATGTGAAGTATCAATACATGTAAGGTTgcactaaaacatatttttatatgtgtgaAATTAAATGGCTTTTGTGTACAGCAGCGATTctataatactatttattgtATCATGTTtcataaattgtacatttttcttaatgttGTGGATGCCTTTTCTATGTAAAGCATGGGTTTTGCTATTGCATAATTAGAGCAAAAAATTATGTACATGTAATATggctttatatatttagaagtaTGTGTGCATATACTTCTCAGTAAACTCGCTTTATTTAGAAttctatataatttaaataaatgtttatatacctagtatacagaaaaacaatataTCTGCACATGTTTTAGATTGACACCCACATACAGTACGGTAGTTGGTTCTAAGTGCTTGTACCCTTCTCTTTCCTATTGGCTGGTAGGCTACACTAGTTGTGATTTCAttgttcacattttaaatgtagaacTGTTAAGCATTAAGTGAATCAACTTTCGCACTTCTGCATTTCCTCCACCACTTATTGAGGTAGATGTGAAAGGTATCTTCTGTGAATTATGTTGCTTGAAGTACTTGACTTGTTGATGATTAGTATGGGGAACATTCCAACAGATGTAAATATCGGATGCCTATGGTTCTGTATACCCTCATAGCCATACATATTCACACATTGAAGGAGTTCGTCAAGGGCCACGTCATCAGTCCGTtaacacttttataaatgtacatacaaaaACTCCAATACTGAGAACTCCTAAAATGCACCTTATGTTTCTTAAACCTTCCTAACGAATCCCAAATTATATCACTTTTAGAACTGGGATTGGAAATACagattttccttttcttttttggaataTGTTTTGAGTTAAAGCAACCTAACTGAACTGGAGTATGGAGCCAGTGCACTTGTGTGTATATctgtattttgtattgtgtgtatatgaTCTATGTAATTGACTCCTTTGACATTTTTGTCGGTAGTCCCTGCTATCCACTTAACTGTATTAACATGTCTTTCAAACCTAAGGTATCAAAAGCACAAATCATTGtattgaaacaaacaaaaagaataaaagacaaacataattaaaaactaaaaataaaaagggtaACTTTGTGATTTTCAGtggaaaaacaaatatgtacaATATCAGTTTTGTCGAATCACAGCAcaggtgaaaaaaaatacagattgctgttttcaaataaatacaactatGGTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09239 HIVEP; human immunodeficiency virus type I enhancer-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206615 lncRNA downstream 52365 19040790 ~ 19043914 (-) True G139871
TU206550 lncRNA downstream 266480 18824880 ~ 18829799 (-) True G139823
TU206519 lncRNA downstream 425346 18669438 ~ 18670933 (-) True G139801
TU206504 lncRNA downstream 461613 18627307 ~ 18634666 (-) True G139798
TU206496 lncRNA downstream 497367 18598694 ~ 18598912 (-) True G139790
TU206702 lncRNA upstream 58372 19224380 ~ 19250790 (-) True G139940
TU206741 lncRNA upstream 132261 19298269 ~ 19300293 (-) False angel2
TU206999 lncRNA upstream 169071 19335079 ~ 19341060 (-) True G140152
TU207027 lncRNA upstream 279820 19445828 ~ 19448712 (-) True G140175
TU207123 lncRNA upstream 570932 19736940 ~ 19737992 (-) False G140240
XM_043220434.1 mRNA downstream 9094 19082545 ~ 19087185 (-) True si:ch211-202p1.5
XM_043218876.1 mRNA downstream 86100 19000843 ~ 19010179 (-) True nmbr
XM_043220516.1 mRNA downstream 222270 18871665 ~ 18874009 (-) True cited2
XM_043219883.1 mRNA downstream 232243 18846395 ~ 18864036 (-) False txlnba
XM_043219539.1 mRNA upstream 13801 19179809 ~ 19232817 (-) False adat2
XM_043219537.1 mRNA upstream 33855 19199863 ~ 19232817 (-) True adat2
XM_043219538.1 mRNA upstream 54909 19220917 ~ 19232817 (-) False adat2
XM_043218875.1 mRNA upstream 88726 19254734 ~ 19256272 (-) True batf3
XM_043219738.1 mRNA upstream 90680 19256688 ~ 19258698 (-) True nsl1
unassigned_transcript_2507 other downstream 20161 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206351 other downstream 649330 18406027 ~ 18446949 (-) False G139706
TU206365 other downstream 653987 18406754 ~ 18442292 (-) True G139706
XR_006247304.1 other downstream 746157 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 1272078 17810274 ~ 17824201 (-) False swt1
TU206720 other upstream 88802 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 95458 19261466 ~ 19262878 (-) True LOC122324949
TU206746 other upstream 134368 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 134368 19300376 ~ 19303968 (-) False angel2
XR_006247245.1 other upstream 435524 19601532 ~ 19615202 (-) False trim54

Expression Profile