RNA id: XM_043220395.1


Basic Information

Item Value
RNA id XM_043220395.1
length 2359
RNA type mRNA
GC content 0.49
exon number 8
gene id slc35f1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23232384 ~ 23311466 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTTCTCATTGGCTAACGCGCGCCGTCGGAAACAGCGGCCTCTAGCGGCCGAACTGTCAATTTCACTCAAAAGCGCACCTCCTCCCAATCATCGCGGCAGTCCTGCTCCGGCGTTCAGAAAATGCGCACTGAAACACCAGGAAACATCTGCTCAGAAAGCAAACGGGGGAACAGGTGCGACGTCGCGCATGCATCTCTAACATCCGACGACTTCTAGGAGCCTCCAGCATCCCTCCACCCCTCCCGCATTTACcggagatacacacacacacacacctgtttatCCTCACCTGCGATATGGAGAGCCGGAGCTCCTCGGAATAACCAAAGCCTCGGGAATGATCGCTGCTTACTGATCGACCGCTTTAGTTCTCCGCTTTAGAGATGATGCCCGAGCACCAGAACCATGTTGTCACCACGATCGAGACCATTCCGTCGGAGACGGTCACCGCATCCCCGTCGCTGTTTCAGAGGATGAAGAAAGTGCTTAACAGGGAACTTCTCCTCACGCTGGCCCTCGGCCAGGTCTTATCGCTGCTCATCTGTGGGATCGGCCTGACCAGCAAATACCTGGCGGACGATTACCACGCCAACACCCCGGTGTTCCAGAGCTTTCTCAACTACATCCTGCTGTTTCTGGTCTACACCACCACGCTCGCAGTCAGGCAAGGAGAAGAGAATCTGCTGGCGATACTGAAAAGAAGATGGTGGAAGTACATGATTCTGGGATTGATTGACATAGAGGCTAATTACCTGGTCATCAAAGCCTACCAGTACACCACACTGACCAGCGTTCAGCTTCTGGACTGCTTCGTGATCCCTGTGGTGCTGCTGCTGTCGTGGTTCTTCCTGTTAGTCAGGTATAAAGTGCTGCACTTCGTGGGTGTAGGAGTGTGTCTCCTGGGCATGGGCTGCATGGTGGGCGCTGACGTCCTGGTGGGCAGACAGCAAGGCCTCGGGGACCATAAGCTTTTAGGGGATTTATTGGTTCTTGCGGGAGCGACCCTGTACGGCATCTCAAATGTTTGTGAGGAGTTCATCGTGAAGAACCTGAGCCGGGTCGAGTTCCTGGGAATGATGGGTCTCTTCGGCTCCTTCTTCAGTGGTATCCAACTggCCATTATGGAGCACAAGGAGCTTCTGAAGGTGCAGTGGGACTGGCAGATCGGGCTGCTGTACATTGGATTCAGCGCGTGTATGTTTGGCTTGTACAGCTTCATGCCGGTGGTAATCAAAAGAACCAGCGCCACAGCGGTGAACCTCTCCCTGCTGACAGCCGACCTGTACAGTCTCTTCTGTGGCCTGTTCCTGTTCCAGTACAAGTTTTCAGGCCTTTACCTGCTGTCCTTCTTCATCATCCTCCTGGGACTGGTCCTgtactcctcctcctccacctacGTGGCACAGGACCCTCGCGTTTATAAACAGTTTCGCAACGCGGGGAACGCCATCACGGACACGCCCACCGTGGGGCCCCTGGAGCCCTCGGTGACCTATACGAGCCTGGGTCAGGAAATAGAGGAGGAGCCTCGCGTGAGAGTCGCCTGAAGGGGGGGGGGCGTGGCCTCTCAGAACCAATCATCCACTGCCCGGCCCAGCAGTCTGTAGAAAAACGAATGATAACGATCACCGAATGATGTAATCAACCACGTAGCAAACGAGTACACTGTGATCACGAACTGTCAATAGGTAGCAGTGACTTCTGTATATCTGAGATATCAGATCCATCATGTATAGAGATGATTTCACCTCATTGCCTCTTTCCCACCCCGCCCGCGGCAAATTAAGTGTTTAGAAGGATTCGTGCTGACTGTTTTGTCCAAATGCTCAattgtgaatgttttattttcttatacGAGCACAAAGGGTTCACTGCATTTGAAAGTTCGACATGGTTTGTTCCACTGCAACTTTACATTTTCAACGACATCTGTACTGAGTTTTACGATGCTGATTTGAGCCAGTGCCTTGCCATGTAATATTATTGTGGGTTACGTTAGCCAATGAGAAACCGCGACTTAAAAACAGTGTCATCTTGTACTGGACATCAGGTCACGATTGTATATCGTATTACCTGctcataattataaatattgccATCCATCAGTCATAAATATGGAAAGGgtacaaaaaaagcattaaaaaaaagttataccatattcattttttttcccaatatttgtcatattttgtgTTGATTCTGCCAAGAAAAAGGGTACATGCGTTTGTATTGAATATAAAAGTCTGTGTAATAGCAATTGATTGTAAACTTGTAAACTATTTTACTGCacttgtttctgttttataagCAGTTCAGTCTTGATTATCATCTTATTCGGATAAAATCCAGTACGATACA

Function

GO: NA

KEGG:

id description
K15287 SLC35F1_2; solute carrier family 35, member F1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247220.1 lncRNA upstream 26302 23194621 ~ 23206082 (+) False LOC122324747
TU208404 lncRNA downstream 18725 23330191 ~ 23332366 (+) True G141207
TU208414 lncRNA downstream 32273 23343739 ~ 23351630 (+) False pln
TU208419 lncRNA downstream 32273 23343739 ~ 23351630 (+) False pln
TU208415 lncRNA downstream 32310 23343776 ~ 23351630 (+) True pln
TU208417 lncRNA downstream 32310 23343776 ~ 23350419 (+) False pln
XM_043220397.1 mRNA upstream 9469 23215076 ~ 23222915 (+) False nus1
XM_043220396.1 mRNA upstream 9469 23215078 ~ 23222915 (+) True nus1
XM_043219390.1 mRNA upstream 18337 23210790 ~ 23214047 (+) True LOC122324745
XM_043220324.1 mRNA upstream 39999 23164445 ~ 23192385 (+) True dcbld1
XM_043218701.1 mRNA upstream 85408 23142907 ~ 23146976 (+) True vgll2a
XM_043220394.1 mRNA downstream 733 23312199 ~ 23320816 (+) True si:dkeyp-114g9.1
XM_043220398.1 mRNA downstream 32249 23343715 ~ 23351655 (+) False pln
XM_043220399.1 mRNA downstream 32249 23343715 ~ 23351655 (+) False pln
XM_043219346.1 mRNA downstream 511634 23823100 ~ 23824879 (+) True hsdl1
XM_043219347.1 mRNA downstream 513465 23824931 ~ 23829080 (+) True gja11
unassigned_transcript_2513 other upstream 132096 23100206 ~ 23100288 (+) True trnal-cag_35
TU208163 other upstream 714709 22506767 ~ 22517675 (+) False fkbp1b
XR_006247241.1 other upstream 755610 22471786 ~ 22476774 (+) False ubxn2a
TU207855 other upstream 1387683 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 2033765 21168775 ~ 21198619 (+) False ipo13b
TU208810 other downstream 761405 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 761405 24072871 ~ 24074423 (+) False G141475
TU208812 other downstream 761405 24072871 ~ 24074423 (+) True G141475
TU208889 other downstream 1128777 24440243 ~ 24493381 (+) True G141524
XR_006247270.1 other downstream 1657414 24968880 ~ 24992667 (+) False LOC122325234

Expression Profile