RNA id: XM_043220400.1


Basic Information

Item Value
RNA id XM_043220400.1
length 3208
RNA type mRNA
GC content 0.38
exon number 7
gene id rab15
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14976262 ~ 14984856 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aattctgaCAACCATGTACTGTAAACGTACACAAACGCGTTTTACTCACGCAGTGGGTAtaagattaatataaaaattaatctaGGTCAATATCGCTATCAAAATCGTGATGCTGTGTGTCCGTAATCTCCACCCATTTCCTGAGGTGTGAAGGATGTCGGCGGAACGCACGGAGAGCGTTCTGTAGCCCACCGCACCCACCGCCACCGGaacggcagcagcagcagcgttcCTGACTGATTTCTGTTCACATCGACTCCTGCTTTCTCCACACAGTATTTCGGGGAATCGGCACGCAAGCGACGGACCGGTCgatggaaaaagagagaagatgATACCGTGAAGAGGGTGGACATGGAAACCCGACGCTGAGTTCCTTTAATTGTGACCATAAGACACCATGGCCAAACAGTATGATGTGCTGTTTAGACTCCTGCTTCTCGGAGACTCCGGTGTCGGCAAAACCTGTTTATTATGCAGATTCACGGACAATGAATTTCATCCCTCTCACATTTCCACCATCGGTGTCGATTTCAAAATGAAGACTTTGGAGATAGACGGCATTAAAGTACGAATACAGATATGGGACACAGCAGGTCAGGAGAGATATCAGACCATCACAAAGCAGTACTACAGAAGAGCACAGGGCATTTTTCTGGTGTATGACATCACAAGCGAGCGCTCGTTCCAGCACATCATGAAGTGGGCCAGCGACGTAGATGAGTACGCCCCTGAAAAAGTGCAGAAGATACTTGTTGGGAACAAGTCTGATGAAGAACAGAAGAGACAAGTAGCTACAGAACAGGGAaataagCTTGCCAAGGCTTATGGAATGGACTTTTTTGAGACAAGTGCCTTTACCAACCACAACATTACAGAGTCTTTCACCCGATTGGCCGAATTAGTCTTACAAGCCAATAAGAAGGATCTTGATTTGTTGGGAGGATCCATGAACGACGAGTTCAGTCTCGCCGTTTTGGAGGAGCAGGAAGGATTGTGTAATGTTAGCGACGACGCCAGTAAGTCCTGCTGGTGCTGAGGACAGGAAGTGACTaccttttttttccatatttatgtTACGTTTACATATTgaatttcattttccaaaatcGACAGTTCTTGTTAAACAGTGTTTGGTGCCTTTAATGGCTTATTTCCTGCTGAttcttataaatattatttcttaatcattatttatttaaaattgactGTGAATTAGGATGGAACGTTACAGATtatagtatatgtatattaacattatttttctcaGTAGGAAAAACGAGATCGAAAGGCCACTGCAGTGCaattgtacattatttatttatgctcaTTCAAGCCACACATTAAGAGCCAgtcaaacattatatttaagttaacatataaaatacaagTTGATTAAAAGTGCAAGGCAGCACTGACCAAATGGTTTatttgaaggaatagttcaatcaaaaatgaaaatgtcctcCTGAATATTTACACACCCTCAGGCTATCCTATATGCAGATGAGTTATCATAACAGGAGAAATTAgcatgatgttttattttgatttagcaACACTTGCCCACCAATGGATCCTTTGCAAttaatgggtgccgtcaaaataagagtccaaactgctgataaaaacatcacaattaatCCACAAGTAAGCAACAATAAATGTCTTGTGAGGTGAAAAGTTGTGTGTTTTGTAAGAAACACTGTTTGTAAGTTTAAACTAAAGTAAAAGTTCATCTGCTATTGtctcctaaaaacaaaaaaaacaccaacacgTTTGGTCTTCTcttgtaaacagtgcttaaTCTGTGCGTATGTCTCTCTTGAATTagaaaaagcaatattatggatagtgTCTTAATGATGATTTGTTTCTCTCAGACACGGCTTTCCGTTTTCCAAGATGTTAATTGGTGGACtagagtcatgtggattattatgatgtttttaatcagctgtttaaactcattccgatggcacccattcactacaaagGAGCCTCTGGTGAACAGGTTCTGCTAAATTGATTCAAATctattcagatttaaaacaaacttgTCTACATCTTGAAAGACATAAGGGTGATTTTTAGgcaaattgtcatttttgggtgaacagtTCCTGGTTATATGGCTTTAGCAGCATATtctttcttgtgttttgttatGGGACTTCATGTGAATATTATTCAGATCTGATTCCGCTTTCTATGAAATTCACGAATGCTAAAACCTTGACCAATGAATGCCCTTTCAAGGTAATACATGTTTTCTTGAATGATGAATTGATGAAACGTCACACGTCACTGTAACAATCTAagcttgttttctgtaaaagcactgtaaaaaaaaaaaaataccgtCACCAAACGTGCTGCTTACCAGTTCTGGTCCACTGTGATTGTAAATGAATGCAAGGATTTTTATCTCATTAATCTGAGGTCACTCACTAATTTACTCAAATAGTATCATTTAATGTGGTATTTTATACCAGTAGTGCATCAAGCTCTTTTTTTCCATCAATAATCACTATTTAGCTGATTTAGAATAGTTGGAATGTTTCAACTTTTACTCTTTAGATGATTCTGGAATCGATGTGGTTTAATTTCCTCACAGCGCACAGAATGATGTTTTTCTCCTGCTTAAGTCAACATCACACAAACTTGAGTGAAATGTATGCGGACTGAAACCGTTGTGATGCCTAGCATTGATGGCGGCGTTATATTGTTAAAGATTTGATGTATATTACACTATTGCAGCATTTTTTGTGTGCAAGTGGTATTGTACTATGTTGAGTTAAATGAACTCTTGAATAATGCTGATATGTTTACCTGTTGAAATATGTCCatgaaaagaaaactgaacAATTGAAATGCGTACgtggttatttatatataaactgtaatattgtgattcTGTTTAGGGGTCAAATAGTTATAGGCAAATAGTTGAATAAACATCTAATTCCGAAGCggttttctattattattaatattattattacaatgagAAATTTGGATAGAAATTTCTCTGTAAGTGCGACACCACAAGTTAACACTAGGAGGCAGTTTTGCAAAGCTGAAATCCTTgtgctgaaatgtatttatgcaaaataaaacacactggCGGGAAAGAAAACGGGACGATGAATGTGTTTACAGTGTTATATAATACTCAGAACTGGggaataaacatttataaaactta

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07908 RAB15; Ras-related protein Rab-15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247215.1 lncRNA downstream 132526 14839057 ~ 14843736 (-) True LOC122324712
TU204663 lncRNA downstream 182553 14793495 ~ 14793709 (-) True G138627
TU204596 lncRNA downstream 397361 14578701 ~ 14578901 (-) True G138579
TU204567 lncRNA downstream 451239 14524732 ~ 14525023 (-) True G138562
TU204529 lncRNA downstream 548010 14426959 ~ 14428252 (-) True G138537
TU204880 lncRNA upstream 12287 14997143 ~ 15003189 (-) False max
TU204882 lncRNA upstream 12287 14997143 ~ 15003189 (-) True max
TU204946 lncRNA upstream 338716 15323572 ~ 15324280 (-) True G138812
TU204944 lncRNA upstream 346945 15331801 ~ 15347281 (-) True G138811
TU204970 lncRNA upstream 385752 15370608 ~ 15380969 (-) True G138828
XM_043219435.1 mRNA downstream 4972 14907899 ~ 14971290 (-) False sipa1l1
XM_043219433.1 mRNA downstream 4973 14907899 ~ 14971289 (-) False sipa1l1
XM_043219432.1 mRNA downstream 4973 14907899 ~ 14971289 (-) False sipa1l1
XM_043219434.1 mRNA downstream 4974 14907899 ~ 14971288 (-) False sipa1l1
XM_043219431.1 mRNA downstream 4974 14907899 ~ 14971288 (-) False sipa1l1
XM_043218913.1 mRNA upstream 12269 14997125 ~ 15003202 (-) False max
XM_043218912.1 mRNA upstream 12269 14997125 ~ 15003202 (-) False max
XM_043218916.1 mRNA upstream 12269 14997125 ~ 15003200 (-) False max
XM_043218914.1 mRNA upstream 12269 14997125 ~ 15003200 (-) False max
XM_043219410.1 mRNA upstream 24644 15009500 ~ 15015269 (-) False srsf5b
TU204531 other downstream 530418 14443592 ~ 14445844 (-) False LOC122324589
TU204189 other downstream 1284255 13664506 ~ 13692007 (-) True G138285
XR_006247291.1 other downstream 1539911 13425475 ~ 13436351 (-) False cracd
TU203701 other downstream 2729252 12246222 ~ 12247010 (-) False mdn1
TU203715 other downstream 2751992 12222810 ~ 12224270 (-) True G137949
TU204892 other upstream 8243 14993099 ~ 15015183 (-) True srsf5b
TU204893 other upstream 8243 14993099 ~ 15015183 (-) False srsf5b
XR_006247368.1 other upstream 305419 15290275 ~ 15290410 (-) True LOC122325630
XR_006247360.1 other upstream 737190 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 737694 15722550 ~ 15722769 (-) True LOC122325623

Expression Profile