RNA id: XM_043220443.1


Basic Information

Item Value
RNA id XM_043220443.1
length 2177
RNA type mRNA
GC content 0.46
exon number 14
gene id wdr21
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14808533 ~ 14813502 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCAATGAACAGTAAGGAGGCGGGAGTTCCCGGTGTCATGAGGAAGAAACAGGAAGAAGTAAGCACGAGTGCATGTTTATGAGATAATACTGACATGACTCCTGAGAAGTAAAAATGAAGCGGGGAAACTGGCGATCGAGTGGCAGGGACCGTCACCGACACCATAATCAGTCACAGTGGAGGGGCAGACACCGTTCAGCCCATGATGAGCAGGATTATAGTTCTGACAGCGCAGCAGGTGACGCAAGTTCATCCTCGGCATCCTCGTCTGCACCAGAGTTGCCAGGTTTCTACTTTGACACAGAGAAAAACCGCTACTTTCGTTTGTTGCCTGGGCACAACAACTGTAACCCTCTGACAAAAGAAGAGCTTCagaaaaaggaggaggagaaaaagagatcAGCACTGCTGGCAGAGGATGATGGTCCTAGGAAGAAAGCTCCCAGGATTGGGCTAAATTCTGCGTTGCTGTTACAGAAGAGACATCTGGGTCTGCTGCCCCCAAGCTCCTATTCTAGGTTGATCCATGAAGTGAAAGTCAGCGGGATGCAGCGTCACAGGCTGGAGGTGCAGAGCTCCAACTCCACCAGCCCGAACACAGATAACTTCCATCTTATTGTTGCAGATTCAGCTTGTGAGCGCGTATTCACAGTAAATGATGTGTCACATGGAGGCTGCAAGTATGGCATTATGAATTTCCACGGCTGCAGAAAAGGCTCTCTGTCGGTGGAGATGTGCGATAACCTTTATTTCACGAACCGCAAGgTGAACTCTGTGTGCTGGGCATCTGTGACGCATACAGACTCTCATGTTCTGTTGTGTTTGGTGGGCATTTCTCAGACCCCAGGCTGTGTAAGCTTATTACCTGCTTCTCTTTTCAGCAACTTCAATCCAGATCAGCCAGGGATGCTGTGCAGTTTTAAGATCTCCACAGCTTGGTCATGTGCATGGTGCCTCAACCCACAGGCCGATAAAACCTTTAGCACTGGCCTTTCTCGACGTGTGATTGTGACGGATGCTGTGACTGGACGTAGAGCGACGTACCTCGCAGGCAGTGATGTTCTAGCTCAACAGTTTGCCCTGAGGGCTCCCGTGCTGTTCAACGGCTGTCGCTCAGGAGAGATCTTCAGCATAGACCTGCGTCAGCGTGACAGGGGTCGCAGTCACGGTTGGAAGACCAGCCGCTTCTTCCAGGAGTCAGCCATCACCTCGGTCCAACTGCTACAGGATGAGAACTACCTCCTCGCTGCTGACATGCTGGGCAAGATAAAGCTGTGGGACATTCGTGTCAAGCGGTCCATCAAACAGTATGAAGGCCACCACAATGAATATGCCTATCTACCCATTCATGTCAATGAACCAGAAGGATTGTTGCTTGCTgTGGGTCAGGACTGCTACACCCGTCTCTGGAGCCTCCACGACAGCCGTCTCCTCAGGACCATCCCTTCACCTCACCCTGCAGGGAAAGACTCGATCCCAAATGTGGTGTTTTCCTCCCAGCTGGGTGGTAGTAGAGGACTTCCTGGACTCCTTATGGCTGTCCGTCACGATCTGTACTACTACTCTTACAACAAAGACTATCAGGACGGTCTAACACTAGAGAGTCAGTGCTAACATTTGccatataaaaacacagactGCTGTGTCTTACTGTCTTACTGACCAAAATGTTGCCATTTTACCATTTGCctatagtttttctttttcagtaatATTCTAGATTAGACTGTGATGGATTCAGAATACTCCGTATCCATTATATCATCAATGgatacatttttggaaaagttTATTGGATATAAGATTTAAACTATAGTTACTTGAAACATACCTCCTAAAAGTGCAATTTCATGTCATGTTGTTTTTCTGGAAatatttgaattgaaatgtgctggggggaaaaaaggaggGCAAGGCATTcttcaattcaaaataaatctaaaatctttGTTTCCGTGAGTTTAATTCAAACCCCAACatgaatttaatgttttatttgtttttgtccataaaatgaaaaacaacattgaaacccattgattttaatttcatgtaCTTTCTGTACAAATatgcatttacacatttttatattgaagCCACACTCTTAGAGGTActcaagtttaatttaattggcATACAAGGTGCAAAGAACATAAAATGATATTCGTGTTTCTTA

Function

GO: NA

KEGG:

id description
K11799 DCAF4; DDB1- and CUL4-associated factor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204663 lncRNA downstream 14824 14793495 ~ 14793709 (-) True G138627
TU204596 lncRNA downstream 229632 14578701 ~ 14578901 (-) True G138579
TU204567 lncRNA downstream 283510 14524732 ~ 14525023 (-) True G138562
TU204494 lncRNA downstream 341119 14269723 ~ 14467414 (-) True G138502
XR_006247215.1 lncRNA upstream 25555 14839057 ~ 14843736 (-) True LOC122324712
TU204880 lncRNA upstream 183641 14997143 ~ 15003189 (-) False max
TU204882 lncRNA upstream 183641 14997143 ~ 15003189 (-) True max
TU204946 lncRNA upstream 510070 15323572 ~ 15324280 (-) True G138812
TU204944 lncRNA upstream 518299 15331801 ~ 15347281 (-) True G138811
XM_043219751.1 mRNA downstream 8994 14797948 ~ 14799539 (-) True pigh
XM_043219337.1 mRNA downstream 24351 14778676 ~ 14784182 (-) True vps18
XM_043218793.1 mRNA downstream 30711 14742955 ~ 14777822 (-) False ino80
XM_043219332.1 mRNA upstream 32507 14846009 ~ 14903495 (-) False rgs6
XM_043219330.1 mRNA upstream 32507 14846009 ~ 14903495 (-) True rgs6
XM_043219331.1 mRNA upstream 32507 14846009 ~ 14903193 (-) False rgs6
XM_043219435.1 mRNA upstream 94397 14907899 ~ 14971290 (-) False sipa1l1
XM_043219433.1 mRNA upstream 94397 14907899 ~ 14971289 (-) False sipa1l1
TU204531 other downstream 362689 14443592 ~ 14445844 (-) False LOC122324589
TU204189 other downstream 1116526 13664506 ~ 13692007 (-) True G138285
XR_006247291.1 other downstream 1372182 13425475 ~ 13436351 (-) False cracd
TU203701 other downstream 2561523 12246222 ~ 12247010 (-) False mdn1
TU203715 other downstream 2584263 12222810 ~ 12224270 (-) True G137949
TU204892 other upstream 179597 14993099 ~ 15015183 (-) True srsf5b
TU204893 other upstream 179597 14993099 ~ 15015183 (-) False srsf5b
XR_006247368.1 other upstream 476773 15290275 ~ 15290410 (-) True LOC122325630
XR_006247360.1 other upstream 908544 15722046 ~ 15722265 (-) True LOC122325621
XR_006247362.1 other upstream 909048 15722550 ~ 15722769 (-) True LOC122325623

Expression Profile