Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043220461.1 |
| length | 1206 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 4 |
| gene id | jdp2b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056718.1 |
| NCBI id | CM032087.1 |
| chromosome length | 27616869 |
| location | 21750876 ~ 21755193 (-) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU207881 | lncRNA | downstream | 51601 | 21698420 ~ 21699275 (-) | True | G140807 |
| TU207904 | lncRNA | downstream | 78952 | 21576838 ~ 21671924 (-) | True | G140824 |
| TU207906 | lncRNA | downstream | 182516 | 21567633 ~ 21568360 (-) | True | G140826 |
| TU207896 | lncRNA | downstream | 198645 | 21549084 ~ 21552231 (-) | True | G140817 |
| XR_006247240.1 | lncRNA | downstream | 238393 | 21507244 ~ 21512483 (-) | True | LOC122324936 |
| TU207946 | lncRNA | upstream | 11756 | 21766949 ~ 21768597 (-) | True | G140859 |
| TU207872 | lncRNA | upstream | 15837 | 21771030 ~ 21774369 (-) | True | G140801 |
| TU207986 | lncRNA | upstream | 85322 | 21840515 ~ 21840765 (-) | True | G140882 |
| TU207988 | lncRNA | upstream | 86569 | 21841762 ~ 21842034 (-) | True | G140884 |
| TU207989 | lncRNA | upstream | 86933 | 21842126 ~ 21842345 (-) | True | G140885 |
| XM_043220634.1 | mRNA | downstream | 9799 | 21732544 ~ 21741077 (-) | True | batf |
| XM_043219766.1 | mRNA | downstream | 20648 | 21713484 ~ 21730228 (-) | False | LOC122324966 |
| XM_043219765.1 | mRNA | downstream | 20648 | 21713484 ~ 21730228 (-) | True | LOC122324966 |
| XM_043219767.1 | mRNA | downstream | 37814 | 21699406 ~ 21713062 (-) | True | wdr26b |
| XM_043219768.1 | mRNA | downstream | 38221 | 21699406 ~ 21712655 (-) | False | wdr26b |
| XM_043218899.1 | mRNA | upstream | 4929 | 21760122 ~ 21763823 (-) | True | si:ch211-153j24.3 |
| XM_043218898.1 | mRNA | upstream | 4929 | 21760122 ~ 21763816 (-) | False | si:ch211-153j24.3 |
| XM_043218879.1 | mRNA | upstream | 24134 | 21779327 ~ 21787486 (-) | False | zc3h14 |
| XM_043218880.1 | mRNA | upstream | 24134 | 21779327 ~ 21787484 (-) | False | zc3h14 |
| XM_043218878.1 | mRNA | upstream | 24134 | 21779327 ~ 21787484 (-) | True | zc3h14 |
| TU207950 | other | downstream | 9872 | 21732546 ~ 21741004 (-) | False | batf |
| TU207887 | other | downstream | 238523 | 21509629 ~ 21512353 (-) | False | LOC122324936 |
| TU207613 | other | downstream | 472135 | 21198710 ~ 21278741 (-) | True | G140616 |
| TU207486 | other | downstream | 775126 | 20973404 ~ 20975750 (-) | False | crnkl1 |
| TU207179 | other | downstream | 1687899 | 20061602 ~ 20062977 (-) | True | G140277 |
| TU207987 | other | upstream | 85920 | 21841113 ~ 21841468 (-) | True | G140883 |
| TU207994 | other | upstream | 90613 | 21845806 ~ 21846917 (-) | False | LOC122325102 |
| TU208103 | other | upstream | 357409 | 22112602 ~ 22113044 (-) | True | G140972 |
| unassigned_transcript_2511 | other | upstream | 359845 | 22115038 ~ 22115120 (-) | True | trnal-uaa_36 |
| unassigned_transcript_2512 | other | upstream | 360514 | 22115707 ~ 22115789 (-) | True | trnal-uaa_37 |
