RNA id: XM_043220475.1


Basic Information

Item Value
RNA id XM_043220475.1
length 3927
RNA type mRNA
GC content 0.47
exon number 23
gene id parp1
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22777121 ~ 22791942 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTATTCTGCGCGGGTGCTTCTGCACGCGGGCTGAGCGCTGTTACTCATCGCATTGTAGTTGTTGTATTTTTCTGACCTCAATTACGTTGTTAGCTCTGCCGCTTTTCACTATTATACACGGAGAATGGCCGATTCCCAGGACGACAAACTCTACAAAGCCGAATACGCCAAAAGCGGACGCGCCTCTTGCaagaaatgcaaagaaaacatcGCTAAAGACTCGCTGAGAATGGCCATCATGGTGCAGTCTCCCATGTTTGATGGGAAAGTTCCTCATTGGCACCATTTTTCCTGCTTTTGGCTCCGGGCCTCGGTGCAGTCGCCCTCGGACATCTCTGGATTTACTGACCTCCGCTGGGCTGACcaggaaaaagtgaaaaaggcCATTGAGAGCGGAGGCGCCACCGAAGGGAAAGGAGAGCAGAAGGGAGCAGCTAAAGGGGAGAAGGCGCTGAATGACTTTGCAGTAGAGTACGCCAAATCCAACAGAAGCACCTGCAAGGGGTGTGACCAAAAAATCGAAAAGGACCACATACGTGTGTCGAAGAAGACAGTGGACCCAGAGAAACCTCAGCTCGGTCTAATAGATCGCTGGTACCACACTGGCTGCTTCGTGAGCCGCCGCGAGGAGCTGCTGTTTAAACCGGAGTACAGCGCCGCTCAGCTCAAAGGTTTTGCGGCTCTAAAAGTTGAAGACAAGGAGGAGCTGAAGAAAAGGCTTCCCGCGGTGAAGAATGAAGGGAAGAGAAAGATAGATGATGTAGATGGGGGAGTCTCcaagaaacagaagaaagaagatgaaaaacTGGAGCTGAAACTGAAGGAGCAAAGCCAGCTGATCTGGGGAATTAAGGACAAGCTGAAGAAATTCTGCTCCATCAATGACATGAAGGAACTGCTTATTGCCAACAATCAAGAAGTTCCCTCTGGGGAGTCAAATATCATAGACCGCCTTTCAGATTGCATGGCATTTGGGTCCTTGAAACCTTGTGAGACTTGCAAAGGGCAGCTTGTGTTTAAGAGCGACGCATACTACTGCACTGGAGACATCTCTGCATGGACCAAATGTGTATTCAAGACTCAGACGCCCGATCGCAAAGACTGGGTCACTCCAAAGGAGTTCGGTGAGATTCCATTCTTGAAGAAGTTTAAGTTTCAACGGCAAGATCGTTTGTTTCCCAAAGATGCCCCTCCAGCAGCCCCCACCCCCTCGTCTGCTGCTGCTACTGTGACCTCAGCTGCCCCGAGCGCATCTAGCGGGGCCAGTAAAAACCTCACTGAGGTGCCAGCAGATAAGCCTCTGACAGGACTGAAGTTGCTGGCTGTTGGAAAACTTAGTAAGAACAAAGATGAGCTGAAAAATGCAGTGGAAGAACTGGGAGGAAAAATCACAGGCTCTGCCAACAAAGCTGTTCTCTGCCTCAGCAGCAAGAAGGAGATCGAAAAAATGAGTAAGAAGATGGAGGAGGTGAGGGACGCAGCTGTGCGTGTGGTGGCGGAGGACTTCCTCACTGACATCAAGGAGTCTGGCAAGGCCCTTCAGGAGCTCATCTCCCTGCATGCCATCTCACCCTGGGGGGCAGAAGTTAAAGTCGAGTCCCAGGCTGCAGCCCCGGCCTCCAAATCCACTGGTGCTCATTCCTCAAAGAGCACTGGCCGAGTCAAAGAGGAAGAAGGAGGAAGcaaatcaaagaaaatgaaGCTGACAGTGAAAGGAGGAGCAGCAGTTGATCCAGAGTCAGGTCTGGAAAACTGCGCTCATGTACTGGATCAGAATGGGAAGATTTACAGTGCCACATTGGGTCTCGTGGACATTGTCAGAGGGACAAACTCGTACTACAAACTACAGCTGCTGGAGGATGACGTCAAGAAACTatactgGGTGTTCAGGTCATGGGGTCGAGTCGGCACCACCATTGGGGGAAACAAACTGGACAAGTTTTACGATAAGAACTCTGCTATGGACAATTTCTGCAGCGTGTATGAGGAAAAAACTGGGAATGCCTGGGCCTCCAGCAACTTCACAAAATACCCCAATAAGTTTTATCCTCTAGAGATTGACTACGGACAGGACGAGGAGGCTGTGAAGAAGTTAACTGCGAGTGCAGGTGCCAAGTCCAAGCTGGACAAACCCGTCCAAGACCTCATCCGAATGATCTTTGATGTGGAGAGCATGAAGAAAGCCATGGTTGAGTTTGAGATCGACTTGCAGAAGATGCCTTTGGGAAAACTAAGTAAGAGACAGATCCAGAGTGCTTATTCCCTCCTGAGTGAGGTCCAACAGGCTGTAGCAGATAGCGCTGCAGAAGCACAGATTTTAGATCTGTCCAATCGCTTCTACACACTGATACCTCATGACTTCGGGATGAAGAAACCACCGCTGTTGAATAACATGGATTACATACAGCAAAAGGTGCAGATGCTGGACAATCTGCTGGACATTGAGGTGGCCTACAGCCTGCTACGGGGAGGAGTGGAGGACAATAAGAAAGATCCCATTGACATTAACTACGAGAAACTCAAAACCAAAATCGAGGTGGTCGACAAGTCATCAAGTGAGGCTCAACTTATACAACAATatgtgaaaaacacacacgccgCTACCCACAACACATATACACTGGATGTCGAGGAGATCTTTAAGATCGACAGGGAGGGTGAGTTCCAGCGTTTCCGTCCTTTCAAAGAATTACACAACCGCCAGCTGTTGTGGCACGGCTCCCGCACCACCAACTACGCCGGTATCCTGTCTCAGGGTCTGCGCATCGCTCCTCCTGAAGCTCCAGTGacaGGTTACATGTTTGGCAAAGGTGTTTACTTTGCCGACATGGTGTCAAAGAGTGCAAACTACTGTCACACATCCCAGGCTGATCCCGTTGGCCTCATTCTGTTGGGAGAGGTTGCCCTTGGAAACATgCATGAACTGAAGAAGGCCTCACACATTACAAAGCTACCAAAGGGTAAACACAGTGTGAAAGGTTTGGGGAGAACTGCTCCAGACCCAAGAGCTACTGTATCTCTGAATGGGGTGGATGTTCCTCTGGGCAAAGGCAGCAACACAAATATTGAAGACACAAGTCTGCTCTACAACGAGTACATTGTGTACGATATTGCTCAGGTTAACCTGAAATACCTGCTGAAGATTCGCTTCAACTACCAGACCTCTCTGTGGTGAGACAGCGGATGAGATCTGTCCAGGTGGAAGCCACTGAAGCCCACTGCTACAGCTTTTAGCACCAAGACCAAGCAGCATTTGGGTTGATAAACGACTAAATCAGTTCTCTAGAGCTTCAACGGCACATTTCCTGTTGCTTTGTCTGTTAGTTTGGAGTAAGCTAAGTGGCTATATCTAAATTGTATCACTGCATTGTTGAAAATATTGCAGACCTTGGTACATATTCACAGAAATGATTGGACTTTTCTGTGGAGATCTTTCTTATAAGCTACCAACGATGATAGGTAGACAGTCTTCCATGTTTCATAGACTTTTTCTTTAATAGTTTTGCTAAACCTGGAATCAGGTTAACTGTAACACATCTAGtgtacacatttttgtttatcttctcaatataaaaaaaagaagaaaatgtacagttttaggaaaaaaaagttgtaagcTAGGATATAGCCTGCTGTAAGTAACCTTTTACTAGAATTGCCAACGTATGGACAAATATATGTTACATCTGTACCATCCCTGTTTTGCTTTTCAGTTTACCGTCCCTTAAAAAAACCTATTTTGGCTAAAATGGTAATGAAAAGCTAAAAGCAATGGCTGCTGCTGAACTCATGCAcctgcaatcttttttttttttttttttttttccttggtaAATGTTTCTCCAGTGGTTTTGTGGAGAAGAAGCTGTGTCCTGACAAATGTCTTTGCATCATAAATAAAACCGTTTTTGGCACATGTTTGAAGct

Function

GO:

id name namespace
GO:0006471 protein ADP-ribosylation biological_process
GO:0005634 nucleus cellular_component
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K24070 PARP1; poly [ADP-ribose] polymerase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208522 lncRNA downstream 36194 22739641 ~ 22740927 (-) True G141283
TU208473 lncRNA downstream 114880 22660615 ~ 22662241 (-) True G141255
TU208238 lncRNA downstream 235427 22541463 ~ 22541694 (-) True G141083
TU208237 lncRNA downstream 235971 22540688 ~ 22541150 (-) True G141082
TU208235 lncRNA downstream 236794 22539920 ~ 22540327 (-) True G141080
TU208585 lncRNA upstream 38972 22830914 ~ 22831421 (-) True G141307
TU208599 lncRNA upstream 86790 22878732 ~ 22890133 (-) True G141319
TU208601 lncRNA upstream 92120 22884062 ~ 22890133 (-) False G141319
TU208609 lncRNA upstream 96578 22888520 ~ 22894015 (-) True G141324
TU208617 lncRNA upstream 117315 22909257 ~ 22915952 (-) True G141331
XM_043218592.1 mRNA downstream 689 22769919 ~ 22776432 (-) True lin9
XM_043219919.1 mRNA downstream 93475 22670042 ~ 22683646 (-) True clic5b
XM_043220550.1 mRNA downstream 209990 22557504 ~ 22567131 (-) True opn8a
XM_043219692.1 mRNA downstream 224847 22541777 ~ 22552274 (-) True opn8b
XM_043219741.1 mRNA downstream 271319 22498745 ~ 22505802 (-) False LOC122324950
XM_043219706.1 mRNA upstream 1295 22793237 ~ 22802967 (-) True si:dkey-206f10.1
XM_043219255.1 mRNA upstream 48954 22840896 ~ 22845553 (-) True pomcb
XM_043219252.1 mRNA upstream 67534 22859476 ~ 22877145 (-) False snx9b
XM_043219248.1 mRNA upstream 67534 22859476 ~ 22877145 (-) True snx9b
XM_043219251.1 mRNA upstream 67534 22859476 ~ 22877144 (-) False snx9b
unassigned_transcript_2512 other downstream 661332 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 662001 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 664077 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 930204 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 935653 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 597227 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 598523 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 598525 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 1000135 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1212745 24004687 ~ 24006665 (-) True G141502

Expression Profile