RNA id: XM_043220479.1


Basic Information

Item Value
RNA id XM_043220479.1
length 2767
RNA type mRNA
GC content 0.51
exon number 15
gene id cpsf2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20661011 ~ 20673120 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGTGACGTCAGAAGCGGCGGTAATGGCTGCTGCTCTCATGCCGCCGATCTGAAACATTACTATGAATTTAAGATGATTTTTCAGCGATTTTCACCATTTGTTACTGACCACAACCCCTGAGTTCAAAAGTGACACAACGAGATACGGGCGGCAGAATGACGTCCATCATCAAGCTGACGGCTCTTTCTGGAGTCCAGGAGGAATCGGCTCTCTGTTACCTCTTACAGGTTGACGAGTTTCGCTTTCTGCTGGACTGTGGCTGGGATGAAAGTTTTTCCATGGACATTATAGATTCCCTGAAGCGGTATGTCCATCAAGTGGATGCAGTGCTGCTTTCTCATCCCGATCATCTGCATCTGGGCGCTTTACCTTACGCTGTGGGCAAACTGGGGCTCAACTGCACCATCTATGCCACCATCCCCGTCTACAAGATGGGCCAGATGTTCATGTACGATCTTTATCAGTCTCGACACAACACAGAAGATTTCACTCTGTTTACACTGGATGACGTCGATTCAGCTTTTGACAAAATCCAGCAGCTGAAATACTCTCAGATCGTCAACTTGAAAGGAAAAGGTCACGGTCTGTCCATCACCCCACTTCCCGCGGGCCACATGATCGGTGGCACAATCTGGAAAATAGTGAAGGACGGAGAGGAAGAGATCATCTATGCCGTCGATTTCAACCACAAGAGGGAGATTCACCTGAACGGCTGCTCCCTGGAGACCATCAGCAGACCGTCTCTCCTCATCACAGACTCCTTCAATGCCTCGTACATTCAGCCTCGCAGGAAACAGCGCGACGAGCAGCTGCTCACCAATGTCATGGAGACTCTCCGTGGTGATGGAAACGTGCTGATCGCCGTGGATACGGCAGGACGAGTGCTGGAACTGGCTCAACTCTTGGATCAGATCTGGAGGACCAAAGACGCAGGATTAGGAGTTTACTCGCTCGCCCTGCTCAACAACGTCAGCTACAACGTGGTGGAGTTCTCAAAGTCTCAGGTCGAGTGGATGAGCGATAAACTGATGCGATGCTTCGAGGACAAGAGGAACAACCCTTTCCAGTTTCGCCACCTGTCTCTCTGTCACAGCTTATCCGATCTGGCCCGTGTGCCCAGCCCAAAGGTGGTTCTGTGCAGCCAGCCTGATCTGGAGGCCGGCTTCTCACGGGAGCTTTTCATACAGTGGTGCCAGGACCCCAAGAACTCGGTCATTCTCACCTACAGGACCACACCGGGAACTCTGGGCCGCTACCTCATAGACAACCCGGGGGAGAAGAGGATCGAGCTTGAGATAAGAAAACGCTGCCGACTGGAAGGACGAGAACTAGAGGAATAcatggagaaagagaaaatgaagaaagaGGCTGCCAAAAAACTAGAGCAGGCGAAAGAGGTGGACATGGACTCGAGTGATGAGAGCGATATGGATGATGATCTGGAGCAGCCGGCGGTGGTGAAGACCAAACATCATGACCTGATGATGAAGGGCGAGGGTGGGAGGAAAGGCAGCTTCTTCAAGCAGGCCAAAAAGTCCTACCCCATGTTCCCTACACACGAGGAGCGAATCAAGTGGGACGAGTACGGAGAAATCATCAGACCAGAGGAGTTTCTGGTTCCAGAGCTTCAGGCCACTGAAGAGGAAAAGAGCAAACTGGAGTCTGGACTGACCAATGGAGAGGAGCCAATGGAGCAGGACTTGTCTGATGTTCCCACCAAGTGCACCAGCACCACACAAACACTAGACATCAGAGCTCGAGTCATGTACATAGATTACGAGGGCCGCTCTGACGGGGACTCCATTAAGAAGATTATAAACCAGATGAAACCCAGACAGCTAATCATCGTTCACGGACCGGCCGAGGCCAGCCAGGACCTGGCCGAGTCCTGCAAGGCCTTCAGCGGCAAAGACATCAAAGTTTACACACCAAAACTACAGGAGACGGTAGACGCCACCAGCGAGACCCACATTTACCAGGTAAGACTGAAGGACTCGTTGGTCAGTTCGCTGCAGTTCTGTAAAGCCAAAGACACAGAGCTGGCCTGGATCGATGGTGTTCTGGACATGCGGGTGGAGAAAGTTGACACAGGAGTCGTCGCAGAGATGGGAGACGCCAAAGAGGAGACGGAGGATGGAGAGCTGACCATGGACGTCACACCAGACCTGACGACCGAGCCCAGCGCCGCCGCTAACCAGCGGGCCATGAAGACTCTGTTTGGAGAAGACGAGAGGGAGATTTCAGAGGAGAGCGACGTCATTCCCACGCTAGAACCACTGCCTGCTCaagagGTCCCGGGTCATCAGTCCGTGTTCATCAACGAGCCTCGTCTGTCGGACTTTAAGCAGGTTCTGCTGCGTGAAGGGATCCAGGCCGAGTTTGTGGGAGGAGTTTTGGTGTGTAATAATCTGGTGGCTGTCAGGAGGacggAAGCGGGACGCATCTGTCTGGAAGGCTGCCATTGTGATGACTACTACAGGATTCGTGAGCTGTTGTATCAGCAGTACGCTGTAGTTTAACAGCTCTCAATCAGCTCCAGCCCCTttcatttcctttcctttcgTAGTTTTTGagttgtgtatattttattatcgtCCCCCCCTCACGTTTAAATGGCAGACGTTCTCTCTGAAAGCCACCCGAGAGCGTCTGTGCAGACTAAAGAagaacattgtttttgtttcaaactGCTGGATGCAAAGAACCGCTTAAGCCTTTTTTACCCTTGATTTTGTCCAGATAAACTTCAGTTTTCGTAATGAAA

Function

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006379 mRNA cleavage biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207360 lncRNA downstream 2654 20634310 ~ 20658357 (-) False pkib
TU207356 lncRNA downstream 34148 20626655 ~ 20626863 (-) True G140413
TU207301 lncRNA downstream 249150 20410629 ~ 20411861 (-) False nkain2
TU207243 lncRNA downstream 374016 20286480 ~ 20286995 (-) True G140328
TU207226 lncRNA downstream 392745 20266668 ~ 20268266 (-) True G140315
TU207404 lncRNA upstream 63468 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA upstream 116786 20789906 ~ 20791701 (-) False G140449
XR_006247242.1 lncRNA upstream 319401 20992521 ~ 20995513 (-) True LOC122324961
TU207496 lncRNA upstream 323246 20996366 ~ 20996681 (-) True G140522
XR_006247273.1 lncRNA upstream 372705 21045825 ~ 21049976 (-) True LOC122325251
XM_043218760.1 mRNA downstream 2631 20634296 ~ 20658380 (-) True pkib
XM_043220375.1 mRNA downstream 27229 20632717 ~ 20633782 (-) True fabp7b
XM_043220374.1 mRNA downstream 28504 20626973 ~ 20632507 (-) True smpdl3a
XM_043220366.1 mRNA downstream 44796 20596263 ~ 20616215 (-) True clvs2
XM_043220489.1 mRNA downstream 118762 20410629 ~ 20542249 (-) True nkain2
XM_043218599.1 mRNA upstream 1877 20674997 ~ 20680821 (-) True riox1
XM_043218860.1 mRNA upstream 33805 20706925 ~ 20718097 (-) True ints9
XM_043218859.1 mRNA upstream 33805 20706925 ~ 20717973 (-) False ints9
XM_043218861.1 mRNA upstream 72082 20745202 ~ 20757734 (-) True hmbox1b
XM_043218863.1 mRNA upstream 72082 20745202 ~ 20757733 (-) False hmbox1b
TU207179 other downstream 598034 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 601408 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 602512 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1045809 19601532 ~ 19615202 (-) False trim54
TU206747 other downstream 1357043 19300376 ~ 19303968 (-) False angel2
TU207486 other upstream 300284 20973404 ~ 20975750 (-) False crnkl1
TU207613 other upstream 525590 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 836509 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 1059426 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 1167993 21841113 ~ 21841468 (-) True G140883

Expression Profile