RNA id: XM_043220496.1


Basic Information

Item Value
RNA id XM_043220496.1
length 1026
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC122325446
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21886498 ~ 21887523 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGATATTTTAACACAAGATTATGATCTTGCTCagttttgttttccttcagtGAACAACTCTTGTCTTAAAGACACACATCATGTTTCTGCTCAGACTGTGGTGTATCTCCTGTTGGTGTCTGCAATGATTGTGACCATTCTAGGAAATTCAGTGGTCATCATCTCCATTGCACACTTCAAACAGCTCCAGACTCCCACGAACATCTTGGTGATGTCCCTGGCTTTAGCGGATCTGCTGCTTGGATTGGTGGTCATGCCTTTCAGTATGATCCGTACTGTGGATGGCTGCTGGTATTTTGGAGAGTTCTTCTGTTTGCTGCACTCCACTTTTGACTTGTTTCTCACATCAGTGTCcatttttcatctaatttttattgcaattgaTCGATATCAGGCTGTTTGTTATCCACTCCAGTATCCTACAAGAATAACCATACCTGTCGCATGGGTCATGGTGATGATAAGTTGGAGCGTGGCTGCATTATATTCCTATGGTTTAGTGTACTCAAAAGCTAATGTGGAAGGACTGGAGGACTATATTGAATCAATATACTGTATGGGAAACTGCAATTTGCTTTTCAATGCATTGTGGGGAGCTATAGACACATTAATAGCTTTTCTCTTGCCTTGTTCTGTCATGATTGGCCTGTATGCAAGAATTTTTGTGATTGCAAAACAGCATGCTAGAAAACTCAATGATGCAAGTCAGCATGAAAATGAGAATATGTTTAAAAGTTCTCGACGATCTGAACGCAAAGCAGCAAAAACTCTTGGTGTGGTCGTGGgtgcttttattatttgctggttaccattttttataaattctttGGTTGACCCTTACATCAACTTTTCCACCCCACTTGTTCTCTTTGATGTGTTTGTCTGGTTAGGCTACATTAACTCAACCATAAACCCCATCATATATGGCCTTTTCTACCCATGGTTCAGAAAAACCCTTTATCTTATTataacattgaaaatatttgaaccAAACTCATCTGATGTAAATGTCTTCAGTGTTTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207993 lncRNA downstream 40695 21845458 ~ 21845803 (-) False LOC122325102
TU207992 lncRNA downstream 41477 21844794 ~ 21845021 (-) True G140888
TU207991 lncRNA downstream 41865 21844015 ~ 21844633 (-) False LOC122324884
TU207990 lncRNA downstream 43576 21842432 ~ 21842922 (-) False LOC122324884
TU207989 lncRNA downstream 44153 21842126 ~ 21842345 (-) True G140885
TU208005 lncRNA upstream 21468 21908991 ~ 21909359 (-) True G140901
TU208019 lncRNA upstream 63223 21950746 ~ 21970149 (-) False LOC122325423
TU208020 lncRNA upstream 74673 21962196 ~ 21963699 (-) False LOC122325422
TU208021 lncRNA upstream 74673 21962196 ~ 21964129 (-) True LOC122325422
XR_006247296.1 lncRNA upstream 74674 21962197 ~ 21963706 (-) False LOC122325422
XM_043220499.1 mRNA downstream 2070 21883406 ~ 21884428 (-) True taar13a
XM_043220485.1 mRNA downstream 6319 21879154 ~ 21880179 (-) True LOC122325436
XM_043220356.1 mRNA downstream 14734 21870742 ~ 21871764 (-) True LOC122325342
XM_043220544.1 mRNA downstream 20612 21864888 ~ 21865886 (-) True taar15
XM_043219990.1 mRNA downstream 21981 21858076 ~ 21864517 (-) True stx7l
XM_043220547.1 mRNA upstream 30295 21917818 ~ 21918804 (-) True taar11
XM_043220548.1 mRNA upstream 47851 21935374 ~ 21936459 (-) True LOC122325511
XM_043218684.1 mRNA upstream 113690 22001213 ~ 22006248 (-) True bmp2b
XM_043220027.1 mRNA upstream 165534 22053057 ~ 22058826 (-) True chgb
XM_043219962.1 mRNA upstream 204549 22092072 ~ 22097205 (-) True gzf1
TU207994 other downstream 39581 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 45030 21841113 ~ 21841468 (-) True G140883
TU207950 other downstream 145494 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 374145 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 607757 21198710 ~ 21278741 (-) True G140616
TU208103 other upstream 225079 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 227515 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 228184 22115707 ~ 22115789 (-) True trnal-uaa_37
XR_006247154.1 other upstream 1501646 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 1502942 23390465 ~ 23401391 (-) False mcm9

Expression Profile