RNA id: XM_043220505.1


Basic Information

Item Value
RNA id XM_043220505.1
length 4966
RNA type mRNA
GC content 0.48
exon number 8
gene id disp1
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24620458 ~ 24673062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttgctctgcgGTCGGAGGCGATCTTCGGTTTCCGTCGGAGTCGTGCAGGTCTCCCCACCTGTCACATTAAGGTCCCGATCAGCCGATCCACGAGGGATCATGGCCCTGAGCGAGGGCTTCAGCACCAGCAATGGAGGATCCTCGACTTCCGCAAACGCCATCGGAGAGCCGGAGGACGAGCCGTGCGCGCAGACCAGCGACCAGGCCCAAGCGGGTCACAACGGCGGCCTGAAACCCAACGGGGCCGCGCGTCCGTCTTCGCCGGGCTCTCAGAGGCTGGCCGTGCTCCTGCCCAACGCTCTCCCGCCGGCCTGCTGCGTTTACTGCTCTCCCCGGCAGCCCGTCTGCTGCAACGGGAACCAGCAGGACTGCGCTCTCTTCCAGAGCTCCTTGTCGTCCGCGGCGCTTCACGTGGGCTCGTGCTGCGTCCAGGGCGTCCGCTGCTTCTGCATGCAGCATCGCTGGCCCGAGCATCTCCAGAACCAGCCCAACATGGCCACGCTGAGCCCTCCAAGGCCTTTCCGGTTTCCCAAAAGTTATGCGGAGCTCATTGCTGATTGGCCGGTGGTGGTGTTGGGGGTGTGTACCGTTCTCATCGTGGTTTGTGCTCTTGTCGGGATCCTCGTGCCTGACCTGCCTGACTTCTCAAATCCACTGCAGGGATTTGAACCGAGAGGCACCGCGATAGGTCAGCGACTCGTAACCTGGAACAACATGGTGAAAAACACCGGCTACAAGGCAACGCTGGCCAACTACCCCTTCAAATACGCAGATGAGCAGGCCAAAAGTCACCAAGATGACAGGTGGTCGAAGGATCGTAGCGATCGAAAGAAAAGACAAGCCGAATGGGATTTTAGTAAAGACAGTTTCTTCTGTGATGTACCAGGTGACAGCTATTCCCGAATCGTATTTGCATCTGCAGAGGGAAAGAACTTGTGGAATATACAggcaataaaatccatgtgcaATTTTGACAATACACGGGTTCGCTCCCATCCCCAGTACTTGGATCTGTGTCAGCGCACCACTGCTGCCTCGTGTTGTCCCAGCTGGACACTTGGGAACTACATAGCTGTCCTCACTAACAAGTCCTCCTGTCAAAAGATCACAGAGCAAGATGTTTCCCACACCCTAAAAATCCTGCGTTCCTGTGCAAAGTATTACCACAACGGCACTCTTGGTCCCGAGTGCTGGGATATGACGACTCGTAAGAAGGACCTCAAGTGCGGCAATGTGCCACGGAAGTGTACAAAATACAATGCCGTATATcagatttttcactttttggtgGATAAAGACTTTCTGAATCCAAAGAACACGGACTACCTTCCACCTAACCTCAAGTACAGCATGCTCTTCTCCCCGACGGAGAAAGGAGAAACAATGATGAACATatatttggacaactttgagAACTGGAACTCCTCGGATGGGATCACGACCATCACAGGAATAGAATTTGGCATCAAACACAACTTATTTCAGGACTACCTTCTGACAGATACCATGTATCCCGCAATAGCAATTGTGATCGTGCTGGTAGTCATGTGCATCTACACAAGATCAATGTTCATCACCCTTATGACCATGTTTGCCATCATCAGTTCGCTCATCGTCTCGTACTTCCTGTACCGTGTGGTCCTCAACTttgattttttcccctttatgAACCTCACCGCGCTCATCATACTTGTAGGAATTGGCGCCGACGATGCATTTGTGCTCTGCGATGTCTGGAACTACACAAAATTTGACAAACCCAATTCTGAACTTTCTGAAACAGTTAGCGTGACGCTTCAGCATGCGGCACTTTCAATGTTTGTCACCAGCTTCACCACGGCTGCTGCCTTTTATGCCAACTATGTGAGCAACATCACTGCCATCCGATGCTTTGGCGTGTATGCTGGTACTGCTATCCTGGTTAACTACATACTGATGGTTACCTGGTTGCCAGCTGTGGTGGTCCTGCATGAGCGTTACCTGGTCAACCTCTTTACATGTTCTCGGCCACACCACCACCAGACACAGGACACTATGCCGTTCTGGACAAGCTTGTGCCAGATGGtcaacaaatgtctttttagCATCTCTGAGACCTCTCGGATATTCTTTGAGAAAGTTTTGCCTTGCATCGTGATCAAGTTACGCTacttgtggctcttgtggttcCTGGCAATGACGGTAGGCGGAGCCTATGTTGTTTGTGTGAATCCCAAAATGAAGCTGCCCTCTCTGGAGCTGTCTGAGTTTCAGGTTTTCCGCTCTTCTCATCCCTTTGAGCGATACGATGCGGAATACAAAAAGCTCTTCATGTTCGAACGGGTCAACCATGGGGAAGACCTCCACATGCCAATCACCATCATTTGGGGAGTTACTCCAGTTGACAATGGAGATCCGCTAAACCCCAAAAACAAGGGTAAACTGACGCTTGACACAAGCTTTAACATTGCGAGTCCTGCAAGTCAAGTATGGATTCTAAACTTCTGCCAGAAGCTTAGGAATCAGAGCTTTGTGTTCCAGTCTGAGGAGCAAGACTTCACCAGCTGCTTCATGGAGACTTTTAAGCAATGGATGGAAAACCAAGATTGTGAAGAAGCCTCCGTCTATCCCTGTTGTAGTCAATCCACGTTCCCTTACCGGCAAGATGTCTTTGAGCTGTGCATCAAACGAGCAATAATGGAACTTGACCGAAGCACCATCTACCACCTTGACAGTAAGACTCCAGGGCCAAGGTTTGACATCAATGACACAATACGAGCAATTGTGCTTGAGTTTCAGAGTACCTACCATTTCACTTTGGCGTACGAGAAGATGCATCAGTTTTACAGAGAAGTCGATGTTTGGATTCAGGAGGAGCTGAGGGATGCTCCTGATGGACTGAGCTACGGATGGTTTGTAAGCAACCTGGAGTTCTACGACTTGCAGGACAGCTTATCAGATGGGACTCTTATTGCTATGGCACTATCGGTGGTAGTGGCCTTCAGTGTTATGCTTCTGACCACCTGGAATATCATCATCAGCCTGTATGCCATCATATCCATTGCTGGTACCATATTTGTCACAGTTGGGTCTCTCGTGCTCTTGGGCTGGGAACTTAATGTGCTTGAATCAGTGACCATCTCAGTTGCTGTAGGCCTCTCTGTGGACTTTGCTGTCCATTATGGAGTGGCGTACCGCCTTGCACCAGAACCAGACAGGGAAGGGAAGGTGGTATTCTCCTTGAGCAGAATGGGCTCGGCTATAGCGATGGCAGCTCTCACAACCTTTGTAGCCGGTGCAATGATGATGCCATCCACAGTTTTGGCCTACACTCAGCTGGGCACGTTTTTGATGCTAATCATGTGCATTAGTTGGGCATTTGCTACGTTTTTCTTTCAATGCATGTGCCGGTGTTTGGGACCTCAGGGCACATGTGGACAGATTCCTTTGCCAAAGAAACTCCAGTGCTATGCCTTTTCAGAGCACACACCTGAAAACCAGTCTAATCCGAGTCAGGGTAAACTCGGTGCTTGCTACACAAGCAAGTACCAGATAGATAATGCAAGAAGTGACGGTCGACACGAACACTACGAGCTTGAGCCCTTGGCGTTGAATGTCAGGAATGAGGAAAAAGCTTCTGATGAGGAACAGGGAGGATGTACGCAGTTGCATAATGGCGTTACTTCTCATCACTCAACCTTGAAAAGTTGCACTGTCCCAGAAGAGCCCAGTACAGAGATTGAAAATGGCTTACCAGGAACAGAGCTTTCACATCTTCATCAATACACGTACAGTGCAAGGTGCACCTGTGAGAACTCCATGCATCAGTATATGAGGGAGCGACAAAGGACTCCTTACCATCCTTGCAGCAATCAGTGTCCTGCTAAACAGAACAATCACTTACCGGTGGGTCAGAACCTTCAGTCCTCACGGGATACGACGCACACTCCCACTGACTGCTTTGTAAACTGCAGCCACATCCAACATTGCTCACAGAGCCCAACATCAAGGCCAGCCCCTCACAGATGTTTCCCCGGGGGATACAGCATGCAAGCCATGCACCTTTTGCATCAGGCACTGTTGTCCGATAATACAGTGTGTGACGAGTCCCATATAAATGCGTGTGGCCCCAATTCACCTCTACCAGAGAACCAGAACTTTCCAGCTCACATTCAGTTTCCAGATGTTCAGTGCTGTGCTTTACCTGACACAGCTCGAGTCTGTACTGTTAATCATGATCCGCAGAAAACGGGGGACTTAGCATTAAATTCCCAGGCCCctcaaaaaatacaatggaaccACATAAAATCAAAAGTAAATGGCACTTGTGTTTTGCTGCAGGACAGTTGTGAGATTCGCGAAGCGATTCCAGTGGTACCGGAGGAAAGTGTCAAATGCAATCTCAGTAACAAAGACAATAATGAAAGGGCAGAGTCTGTATCtcccaaaaaattaaattgttttaaaaagactgTAAAGTGCAATTCTGTAGAGTTTCACAAGCCAAAAACCACCGTGCCTACTATTGCCATTCGTTCAAAAGCCTCGTCTGAGAGTTTAtgctaacattttaatattagagCATTAGATCAAGATATCAAAACGTATTGTCATCTTTTAGCACAGAAAGGCAACTGGTTGTTTCCTGACAGGAAAGAGTTTCTTGACATTATGTGCATGGGAATTGACATGACGTCAAGGAAACATTTGTCTGATTTAAGAGGACACTATTTTGACCCAGTGTCTTGTATTATTTGTGTGACATCtgttttagattatttttctaAAGTTTGGCCACAGGTTCATGGGAACAGAAAAACATTAGAATTATTTTCCTGCACATTTCATATGaacttgtatatattttatgtgttgtGTATGTATCTGAATCATGCACTTTTTCCATTGATGCTGATTGGAATGTTTTGcttataaaagtttttaatacTTCACATGCAAACCTTTAGGAGTTTCTGTGATGGTGAA

Function

GO:

id name namespace
GO:0042694 muscle cell fate specification biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048839 inner ear development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0008015 blood circulation biological_process
GO:0021984 adenohypophysis development biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209133 lncRNA downstream 3811 24611866 ~ 24616647 (-) True LOC122325459
XR_006247301.1 lncRNA downstream 4048 24614271 ~ 24616410 (-) False LOC122325459
TU209088 lncRNA downstream 74909 24545016 ~ 24545549 (-) True G141624
TU209086 lncRNA downstream 96627 24522383 ~ 24523831 (-) True G141622
TU209098 lncRNA downstream 98247 24521977 ~ 24522211 (-) True G141634
TU209141 lncRNA upstream 47844 24692002 ~ 24692486 (-) True G141662
TU209121 lncRNA upstream 80784 24724942 ~ 24726684 (-) True G141648
TU209124 lncRNA upstream 82903 24727061 ~ 24727733 (-) True G141650
TU209158 lncRNA upstream 132457 24776615 ~ 24776863 (-) True G141676
TU209170 lncRNA upstream 144514 24788672 ~ 24788904 (-) True G141679
XM_043219986.1 mRNA downstream 33204 24583784 ~ 24587254 (-) True LOC122325099
XM_043220341.1 mRNA downstream 37880 24575573 ~ 24582578 (-) False rnf8
XM_043220342.1 mRNA downstream 37880 24575575 ~ 24582578 (-) False rnf8
XM_043220337.1 mRNA downstream 37881 24575348 ~ 24582577 (-) True rnf8
XM_043219699.1 mRNA upstream 30052 24674210 ~ 24677624 (-) True LOC122324925
XM_043219698.1 mRNA upstream 34328 24678486 ~ 24682474 (-) True LOC122324924
XM_043219695.1 mRNA upstream 38469 24682627 ~ 24691089 (-) True brox
XM_043219697.1 mRNA upstream 38469 24682627 ~ 24690165 (-) False brox
XM_043220220.1 mRNA upstream 55014 24699172 ~ 24721106 (-) True mia3
TU209099 other downstream 89583 24525882 ~ 24530875 (-) False slc35b2
TU209065 other downstream 359422 24257786 ~ 24261036 (-) False LOC122324315
TU208856 other downstream 613793 24004687 ~ 24006665 (-) True G141502
XR_006247216.1 other downstream 797408 23792077 ~ 23823050 (-) False tbc1d32
XR_006247156.1 other downstream 1219067 23390467 ~ 23401391 (-) False mcm9
TU209178 other upstream 203507 24847665 ~ 24851761 (-) False rhpn1
TU209665 other upstream 684422 25328580 ~ 25329605 (-) False wasf1
TU209701 other upstream 686768 25330926 ~ 25377416 (-) False wasf1
TU209689 other upstream 748962 25393120 ~ 25407942 (-) False mettl24
TU209680 other upstream 752050 25396208 ~ 25407942 (-) False mettl24

Expression Profile