RNA id: XM_043220516.1


Basic Information

Item Value
RNA id XM_043220516.1
length 2143
RNA type mRNA
GC content 0.43
exon number 2
gene id cited2
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18871665 ~ 18874009 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGAGAAGCATGCAGCAGTTTTTTTCGTAATGTTTTTGATGCGGAGGCTGGCGCTGAATGCGGTCTGTATTTGGAGAGCATACGCTTTTTATTGACTTGGATTAGGAGGGATTGTAAACTCTTTCATCTCTGGGATTGTCAGTTACTTTTTGCCGTTGCCGACTGCGGTGCGACGCACTCAGCAGATTCAAGCAGAGAGTGGAATGGTAGACCGCATGATGGCAATGAACCATGGACGTTTCCCAGATGCTGTGAATGGGCATCAGCACTCCGCGCGCAGGATGGGAATGGGACAGTTTTCCAACGCGCTTCCGCAGCAGCAGCATTATAACGTTATCATGGGGGATCACATGCATTACGCGGGAGGGAATGTAAACGCAAACCACGGGATCCGGCATTCCATGGCCTCTGGGAATAATATAAATGGAGGGATCCCCAATGGCAACTTGCCTGCCCGCTTTAACTCCCAGTTTGTCGGACAAGGGCAACAGCTCGCTGCCAGCATGCAGTTGCAGAAGCTCAACACGCCTTACTACAGTCACCACACGCACCCTTCCCATCATCACCATTACATGCACGAACTGCACCCCGCCAGCCACCAGTTAAACGGGACAGGACAGCAGTTCCGAGACAGTAACGCTAAGCAGAACGCGTCTGGGGTTCCTCTGCCTGGCCACCACATGCCTGCAGCAATGCTGCCCCCCAACGTTATCGACACGGATTTTATTGACGAGGAGGTCTTGATGTCACTGGTGATAGAAATGGGCTTGGACCGAATAAAGGAGCTGCCAGAGCTTTGGCTGGGACAGAATGAGTTTGATTTCATGACAGACTTCGTTTGTAAGCAGCAGCCCAGCCGAGTGAGCTGTTAATCtcacctttttcatttttgctccttttttttttttttttttttggctttgtcctttttttatgaGACTGATATTACTGGTGTGTTTTCCTAGATCCATAAACCACAGGGTTCCCACAGTCCTGGATATATCAGGGAGtttcaaaagtttgatttcCCGGGCCTGAAAAAGTCATGtcggttttaattaaatatgtaaaaggttatggacattttttttgtgtagtgtttttttttgtttgttttgcttagCTTTTTAGATCACATTGACAAAATTAACAGTCtctatatttttgaaaaaaaaatccttcagaTCACAAATGACTGGAGAAGGAGGGGAAATCGTTTAAAAACATTAGTGAGAAAGTGTGGGAACCCTAAAATCCGAATGATTAACCCACAGAACAGCAATGGAAGTACCGTTCAAGAGTAAACTATCATCAGCTGATTCATGCCGTTATGTAACAGAAATGGATTTGTTTTGCATGAGAATGATTTGGACACCTAAGAGTCATGCTATGCATCACATATGCAGGGGCTGGAGAGTGAGAAATGCAAAGAAATCCCCCGAAAACTCTGTTCAGTATTAATGTAGCAGAcgaaatagacaaaaaaaatcatgttctgTTCCTTCAGACACTTCTAACATGAGACCTCCAGTGATATCAGATGTCAGTGAATGCATATTCTAAATAATGTTGGTGGTTATGTGACATGATTGTAGATAATAGTGTGTAATTGTCTCAATCAGCAATGTACTATAAACTTTAGTGGCCATATTTACCAGATTCCTGTGCTGCTCAGAGATTCACTGAACTGTGAGCAGATGCTTCAAGTTGTTCTTCTTCTCTCCACCCTTTCTACATCTTCTCAGGCCCGTGTTGCCTCCAtgatgcttgtgtgtgtatatcagaGCCTGAAACATATATGGAAGTGATACGAATGTGAGCGAGAGTGTGCATTTGCCAGCTGCTCTATATGCTTAATTGAGTACAGTGTATTGGAAAGTCCAGGAAAAGACGTTCGGATCCTGAATGTCTGGAATGTTGTAAAGGAAAGGAATGTGGAAATAATCCCAACACAGAAGAGTTTCATCTTCATCGGTTTTCAAAAATAGATAGACCACTGTGCTTATTATAGTATGCGGTACATGGCAATACTACTGTGTTGAGGCTTTCTAGGaaagttttacagtatttttgtatatttttagaaaaaatgttaatttattatattttaatttgcaaacaTGAATAAAGCAGCAGAGGCTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K21361 CITED2; Cbp/p300-interacting transactivator 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206550 lncRNA downstream 41866 18824880 ~ 18829799 (-) True G139823
TU206519 lncRNA downstream 200732 18669438 ~ 18670933 (-) True G139801
TU206504 lncRNA downstream 236999 18627307 ~ 18634666 (-) True G139798
TU206496 lncRNA downstream 272753 18598694 ~ 18598912 (-) True G139790
TU206392 lncRNA downstream 419533 18449962 ~ 18452132 (-) False LOC122324299
TU206615 lncRNA upstream 166781 19040790 ~ 19043914 (-) True G139871
TU206658 lncRNA upstream 285829 19159838 ~ 19160157 (-) True G139903
TU206702 lncRNA upstream 350371 19224380 ~ 19250790 (-) True G139940
TU206741 lncRNA upstream 424260 19298269 ~ 19300293 (-) False angel2
TU206999 lncRNA upstream 461070 19335079 ~ 19341060 (-) True G140152
XM_043219883.1 mRNA downstream 7629 18846395 ~ 18864036 (-) False txlnba
XM_043219881.1 mRNA downstream 7629 18846395 ~ 18864036 (-) True txlnba
XM_043219882.1 mRNA downstream 7629 18846395 ~ 18864036 (-) False txlnba
XM_043219728.1 mRNA downstream 31341 18833395 ~ 18840324 (-) False slc25a27
XM_043219729.1 mRNA downstream 35992 18833395 ~ 18835673 (-) True slc25a27
XM_043218876.1 mRNA upstream 126834 19000843 ~ 19010179 (-) True nmbr
XM_043220434.1 mRNA upstream 208536 19082545 ~ 19087185 (-) True si:ch211-202p1.5
XM_043220378.1 mRNA upstream 222270 19096279 ~ 19166008 (-) True hivep2a
XM_043220376.1 mRNA upstream 222270 19096279 ~ 19162787 (-) False hivep2a
XM_043220377.1 mRNA upstream 222270 19096279 ~ 19137484 (-) False hivep2a
TU206351 other downstream 424716 18406027 ~ 18446949 (-) False G139706
TU206365 other downstream 429373 18406754 ~ 18442292 (-) True G139706
XR_006247304.1 other downstream 521543 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 1047464 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 1443594 17346806 ~ 17428071 (-) True erh
unassigned_transcript_2507 other upstream 202037 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 380801 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 387457 19261466 ~ 19262878 (-) True LOC122324949
TU206746 other upstream 426367 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 426367 19300376 ~ 19303968 (-) False angel2

Expression Profile