RNA id: XM_043220535.1


Basic Information

Item Value
RNA id XM_043220535.1
length 1974
RNA type mRNA
GC content 0.42
exon number 14
gene id LOC122325497
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18401166 ~ 18405819 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTATTCAAGCTCTCCTTCAGAGGGTCCACTTTGCCTGAAAGatatCAATGAATGTAAAGATGCAGTATCAGTGTGTGGTCCATACTCAGATTGTATTAACTTCATTGGGAGTCACATGTGTTCATGCTGGAGTGGATTTAATACCTCCAATAAAGACAGTCCTGTGAGCCGTAACAACTCATGTCAGGatataaatgaatgtCTGTTCAGTTCACCTGTATGTGGTCCAAATTCCATCTGCACAAATCAGCTGGGAAGTTATAATTGTTCATGTCTGGATGGGTTCACTGCAACAAACTCACTTCTCCTCATCAGCAACAATAACACATGTAGAGATGTGAATGAATGTCTTCAGACGACGGAGGTCTGTGGTCCAAACTCTCGTTGCACAAACTTAATTGGGAGTTACAGCTGTTCCTGCTTGACTGGATATACAGTAACAAATAGCAGTGAACTAGTCAGGGCCAGGAACCCATGCAATGTGACTCTGCCTTTGACTGAGTATCTGATTGAAATTCAGATCAATAGCATGGACAGCAGAATGACTGATCAGCTGAGGAACATCCTGATGTATTTCAGTTTGCCCTACACAATCAGTGACAGCACTAACATCACAGAAATCAACATAACTACTGTGTGTTCCCTGAATGAAACCCAGTATCAGTGTAAATGTGAGGGTCTGTTTGTTTGGCCGAATGACACGTGTTACTTATACGAGGCCTGTGATGTCATCACTAATGGTTCATGTACATGTATCAATGCCCTTCCAACCGACGGACAGTTCTGCCAAGTACTACCTTCTAAATACGTGATTGACATTGATTTGAGATTCTTTGACTTGTTCCTGGTGGATTACTTAAGAAATCTCGTCAGAAATATCAGCCTGCCTTTGACTCTGAGAAACAGCATTAATATCACAGACATCGATATGAATACTGTGTGTGGGTTAAATGGAACAGAATATGAGTGCCAGTGTGAGCAGGATCATGTCTGGCCCAGTGACACCTGCAGAGCCTAtcaggtgtgtgatggcattgTGGGAGGCACTTGTGGATGTATTCAAGCTCTCCCTTCAGAGGGTCCACTTTGCCTGAAAGatatCAATGAATGTAAAGATGCAGTATCAGTGTGTGGTCCATACTCAGATTGTATTAACTTCATTGGGAGTCACATGTGTTCATGCTGGAGTGGATTTAATACCTCCAATAAAGACAGTCCTGTGAGCCGTAACAACTCATGTCAGGatataaatgaatgtCTGTTCAGTTCACCTGTATGTGGTCCAAATTCCATCTGCACAAATCAGCTGGGAAGTTATAATTGTTCATGTCTGGATGGGTTCACTGCAACAAACTCACTTCTCCTCATCAGCAACAATAACACATGTAGAgATGTGAATGAATGTCTTCAGACGACGGAGGTCTGTGGTCCAAACTCTCGTTGCACAAACTTAATTGGGAGTTACAGCTGTTCCTGCTTGACTGGATATACAGTAACAAATAGCAGTGAACTAGTCAGGGCCAGGAACCCATGCAATGTGACTCTGCCTTTGACTGAGTATCTGATTGAAATTCAGATCAATAGCATGGACAGCAGAATGACTGATCAGCTGAGGAACATCCTGATGTATTTCAGTTTGCCCTACACAATCAGTGACAGCACTAACATCACAGAAATCAACATAACTACTGTGTGTTCCCTGAATGAAACCCAGTATCAGTGTAAATGTGAGGGTCTGTTTGTTTGGCCGAATGACACGTGTTACTTATACGAGGCCTGTGATGTCATCACTAATGGTTCATGTACATGTATCAATGCCCTTCCAACCGACGGACAGTTCTGCCAAGTACTACCTTCTAAATACGTGATTGACATTGATTTGAGATTCTTTGACTTGTTCCTGGTGGATTACTTAAGAAATCTCGTCAGAAATATCAGCCTGCCTGCCTTTGACTCTGAGAAACAGCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206343 lncRNA downstream 58836 18342047 ~ 18342330 (-) True G139704
TU206341 lncRNA downstream 59983 18340729 ~ 18341183 (-) True G139702
TU206340 lncRNA downstream 60922 18340029 ~ 18340244 (-) True G139701
TU206339 lncRNA downstream 61656 18339274 ~ 18339510 (-) True G139700
TU206317 lncRNA downstream 87561 18311356 ~ 18313605 (-) False G139681
XR_006247142.1 lncRNA upstream 44125 18449944 ~ 18452122 (-) False LOC122324299
XR_006247141.1 lncRNA upstream 44126 18449945 ~ 18452116 (-) True LOC122324299
TU206392 lncRNA upstream 44143 18449962 ~ 18452132 (-) False LOC122324299
TU206496 lncRNA upstream 192875 18598694 ~ 18598912 (-) True G139790
TU206504 lncRNA upstream 221488 18627307 ~ 18634666 (-) True G139798
XM_043218608.1 mRNA downstream 37305 18354170 ~ 18363861 (-) True LOC122324297
XM_043220580.1 mRNA downstream 51044 18343463 ~ 18350122 (-) False adgrf3b
XM_043220579.1 mRNA downstream 51045 18343463 ~ 18350121 (-) False adgrf3b
XM_043219845.1 mRNA downstream 70114 18325927 ~ 18331052 (-) True pla2g7
XM_043219314.1 mRNA downstream 170111 18214570 ~ 18231055 (-) True fzd3a
XM_043220537.1 mRNA upstream 3339 18409158 ~ 18416776 (-) True LOC122325499
XM_043218609.1 mRNA upstream 13972 18419791 ~ 18431680 (-) True LOC122324298
XM_043218607.1 mRNA upstream 26014 18431833 ~ 18447372 (-) False LOC122324295
XM_043218605.1 mRNA upstream 26014 18431833 ~ 18447364 (-) False LOC122324295
XM_043218604.1 mRNA upstream 26014 18431833 ~ 18447364 (-) True LOC122324295
XR_006247304.1 other downstream 51044 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 576965 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 973095 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 973095 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1938950 16455468 ~ 16462216 (-) True G139030
TU206351 other upstream 208 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 935 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 670227 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 848991 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 855647 19261466 ~ 19262878 (-) True LOC122324949

Expression Profile