RNA id: XM_043220539.1


Basic Information

Item Value
RNA id XM_043220539.1
length 1980
RNA type mRNA
GC content 0.49
exon number 14
gene id lbr
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18670952 ~ 18679703 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTAGGTTGAGCGGTCACAGAGGGAGGAACGAATTCAGAGCGGGGGccagtgttttaaaacaatatactttattttatgaagTTCCGTAGATAAGCTTTGGAGATTTTTTTAGGATATTAAAATCGACTGAAGGTAAACGAGGATGCCGACTACAAGGTTTCAGATTGGAGATAGTGTAATGGGCCGCTGGCCTGGCAGCAACCTGTACTATGAGGTCAAGGTGCTGAGTTATGACAACAAGGCTCGGATGTACACCGTCATCTACAAAGATGGTACTGAACTGGAGCTGAGGGAATCTGACATCACGAGCCTGGTGATATTTAAGCAGGGAGTTGCACGCTCTCGGTCAAGATCTCGCTCACCGGGACGTTCGCGTCGCAGTCGTTCCCGCTCTCCAGCTAGGACGTCCCGCCGATCTTCCTCTCGCACCACAGATGTGCGCaaggaaaaactgaaagaatCGCTGGAGGTCCGGCTCACCCCTCTGCCGATGACACACGAGAACAATAGCAACAGCAAACATGAgaagaaagaggaaaataatACAGCCAATACAGCTTCCACAATCACCGAGGAGAAGACAGAGACTGAATCAGAGAACCAGACAGGTGGGCGCTACAATCTACGGCGCAGGAAGGACCAGGGCGATGGCAAGACAGTAGCGTTGGAGCAAAAGACAGAGACGGAGACACTGCAAGCTAAACCCCCTGCTGTCGGTGCCGTCAAGACGACTGAACTGGAGTTCGGAGGAAGAGTTGGTGTGTTCTTCCTGATGTTTCTGTTGCCTGTGGCTGTGTTGGCATTGCTCATTCTCTGCGGGCAGAAGGATGCCAGCCTCCAGAGCTTCCCTCTTGAGCTCCCTGCCCTTCAGTCTCTCTGGGACTGTCAGGTCTTTGGCATCGTCCTGCTCTGGCTTCTCTCCCAGGCCGCTCTCTCCCTGCTCCCTGTCGGAAAGCTCGTTGAAGGAATGCCTCTCAACAATGggaaaactttaaaatacaggATCAATGGTTTCTATGCACTTGTCCTCACGTCCGTGGCAGTAGCTGTTGCCTTGTATCAGGAGGTGGATTTTGGCTACATCCATGCTAACTTTCTGCAGTTCTACACCTCGGCCCTGCTCATCGTCACTCTTCTCAGCATCTACCTTTTCATCCGCTCCCGCTGGGCGTCTGAAGATGAACTTGCTCCTGGAGGCAACTCTGGCTACATTATCTATGACTTCTTCATGGGCAGGGAGTTGAATCCCCGCATCAAGAGCTTCGATATCAAGTTCTTCTGTGAGATGCGCCCAGGCCTGATGGGTTGGGTATTGATTAACTTTGCCATGTTGCAAGCTGAAATGAAGCAGCAGAATCTAGAGAATCCCTCTCCAGCGATGCTCCTGGTCAACATCTTCCAACTCCTGTGGGTTGTTGACGGCATTTGGCATGAGGAGAAACTTCTGACCATGATGGATATAGTATACGACGGCTTTGGATTTATGCTGACATTTGGAGATCTGGCTTTTGTTCCCTTCACATTCACCTGTCAAGCTTACTATCTAGTCAGCCATCCCAATGAACTCTCTGTATTCTGGATCATTACTCTCATCACTATGAATGGAGTTGGATACTATATTTTCCGGAAAGCCAATTCTCAGAAGTTTGCGTTCAGGAAAAACCCTTCTGACCCAGCATTGTCTCACCTGAAAACCATTCCTACTGCAACTGGAAAGAGTCTTATCGTGTCTGGTCTTTGGGGGTGGGTCCGGCATCCTAATTACCTGGGTGACATCATCATGGGGTTGGCTTGGTCTTTGCCATGTGGATTCAACCATTTGATCCCGTACTTTTACCTCATCTACTTGATCACTCTGTTGGTgcaagaccccactcaagagcacttacgGCACTACTGCCTTTTGCTGATATGCTTCTATATGGCTCCTCATTGTAatgtcgctttggataaagcgTCTGCTACTGCAaagctgtaa

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005637 nuclear inner membrane cellular_component
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K19532 LBR; Delta14-sterol reductase (lamin-B receptor)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206519 lncRNA downstream 19 18669438 ~ 18670933 (-) True G139801
TU206504 lncRNA downstream 36286 18627307 ~ 18634666 (-) True G139798
TU206496 lncRNA downstream 72040 18598694 ~ 18598912 (-) True G139790
TU206392 lncRNA downstream 218820 18449962 ~ 18452132 (-) False LOC122324299
XR_006247142.1 lncRNA downstream 218830 18449944 ~ 18452122 (-) False LOC122324299
TU206550 lncRNA upstream 145177 18824880 ~ 18829799 (-) True G139823
TU206615 lncRNA upstream 361087 19040790 ~ 19043914 (-) True G139871
TU206658 lncRNA upstream 480135 19159838 ~ 19160157 (-) True G139903
TU206702 lncRNA upstream 544677 19224380 ~ 19250790 (-) True G139940
TU206741 lncRNA upstream 618566 19298269 ~ 19300293 (-) False angel2
XM_043220151.1 mRNA downstream 1873 18661509 ~ 18669079 (-) True si:dkey-1j5.4
XM_043220348.1 mRNA downstream 63409 18604651 ~ 18607543 (-) True LOC122325333
XM_043220441.1 mRNA downstream 115658 18528438 ~ 18555294 (-) True ptchd4
XM_043219440.1 mRNA downstream 197693 18453708 ~ 18473259 (-) True tnfrsf21
XM_043218604.1 mRNA downstream 223588 18431833 ~ 18447364 (-) True LOC122324295
XM_043219342.1 mRNA upstream 1190 18680893 ~ 18733506 (-) True enah
XM_043219446.1 mRNA upstream 86456 18766159 ~ 18779707 (-) True slc5a6a
XM_043219448.1 mRNA upstream 101900 18781603 ~ 18784598 (-) True rpl7l1
XM_043219450.1 mRNA upstream 150721 18830424 ~ 18831573 (-) True ptrhd1
XM_043219728.1 mRNA upstream 153692 18833395 ~ 18840324 (-) False slc25a27
TU206351 other downstream 224003 18406027 ~ 18446949 (-) False G139706
TU206365 other downstream 228660 18406754 ~ 18442292 (-) True G139706
XR_006247304.1 other downstream 320830 18343472 ~ 18350122 (-) True adgrf3b
XR_006247229.1 other downstream 846751 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 1242881 17346806 ~ 17428071 (-) True erh
unassigned_transcript_2507 other upstream 396343 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 575107 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 581763 19261466 ~ 19262878 (-) True LOC122324949
TU206746 other upstream 620673 19300376 ~ 19302848 (-) False angel2
TU206747 other upstream 620673 19300376 ~ 19303968 (-) False angel2

Expression Profile