RNA id: XM_043220544.1


Basic Information

Item Value
RNA id XM_043220544.1
length 999
RNA type mRNA
GC content 0.38
exon number 1
gene id taar15
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21864888 ~ 21865886 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAATTTCTTGAACATCACTGTCTTCCTCACTGGAATACAAGCTGTTCACTTgactttcatttgaattatgTTAATCTATTCTTGTTCCTGTACATATCCACAGTCTCTGTGCTGACGGTGTGTGGAAATCTTCTTGTCATCGTTTCTATAATGATTTTCAAGCAGCTTCACACGCCGGCCAACCTCCTCATCCTCTCATTGGCCCTTTCTGACTTCTTGGTGGGAATCTGTGTGATGCCTGTTGAAAGCATTAGAAGCATTAACTCCTGTTTTTATATGGGAAAGTCGCACTGTCATATATTTCATGTGATTATGTCTGTGCTTGGGTCTGTGTCACTCATTAACATCATGCTTGTAGCTATTGATCgttattttgctgtttgtgAGCCACTCATGTATGTGTCCAAATTGACAATTAGAAAAACACTGATGTGCATAAGTTTAGGATGGTCTGTGTCCATATGTTATAATCTAGTACCAGTGGATTTAGGGAATTCAAACCTGACAGGACAAATTGTTATCTGTCTAAGGGAATGTGCAGTGGCTGTCAGCAATGCCTGGGGTCCAGCCGACTTGATAGTGAGCTTCATTGCTCCgtgtataataatgttaattttgtatGTAAGAATTCTTACTGTGGCCTTAAGACAAGCTAAAATAATTTCCAACACTTCAAAGAAAAAGGAATCTCAGAAAAATCTGAAGTCATTCCGGAAATCAGAggtgaaagcaaccaaaacgtTGAGCATAATTGtccttgtgtattttatttgctgGGTTCCCTGGTATATAAGTATGCTTAATATGAAACAGTTTCAGAAGTCATCTGTGATCCTCTCTGCTTTACTCTGTTTGTTTTACACTAATTCATGCATCAATCCctttatatatgcaatatattaccCCTGGTTCAAAAGGTCAGTGAAGCTAGTGGTTAGCCTAAAAATACTGCATACAGTCACTaaccaaattaatttatttaccaAAGACgtttaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207993 lncRNA downstream 19085 21845458 ~ 21845803 (-) False LOC122325102
TU207992 lncRNA downstream 19867 21844794 ~ 21845021 (-) True G140888
TU207991 lncRNA downstream 20255 21844015 ~ 21844633 (-) False LOC122324884
TU207990 lncRNA downstream 21966 21842432 ~ 21842922 (-) False LOC122324884
TU207989 lncRNA downstream 22543 21842126 ~ 21842345 (-) True G140885
TU208005 lncRNA upstream 43105 21908991 ~ 21909359 (-) True G140901
TU208019 lncRNA upstream 84860 21950746 ~ 21970149 (-) False LOC122325423
TU208020 lncRNA upstream 96310 21962196 ~ 21963699 (-) False LOC122325422
TU208021 lncRNA upstream 96310 21962196 ~ 21964129 (-) True LOC122325422
XR_006247296.1 lncRNA upstream 96311 21962197 ~ 21963706 (-) False LOC122325422
XM_043219990.1 mRNA downstream 371 21858076 ~ 21864517 (-) True stx7l
XM_043219988.1 mRNA downstream 10636 21852059 ~ 21854252 (-) True LOC122325101
XM_043219989.1 mRNA downstream 18283 21845214 ~ 21846605 (-) True LOC122325102
XM_043219617.1 mRNA downstream 20555 21842600 ~ 21844333 (-) True LOC122324884
XM_043219616.1 mRNA downstream 25958 21835959 ~ 21838930 (-) True LOC122324883
XM_043220356.1 mRNA upstream 4856 21870742 ~ 21871764 (-) True LOC122325342
XM_043220485.1 mRNA upstream 13268 21879154 ~ 21880179 (-) True LOC122325436
XM_043220499.1 mRNA upstream 17520 21883406 ~ 21884428 (-) True taar13a
XM_043220496.1 mRNA upstream 20612 21886498 ~ 21887523 (-) True LOC122325446
XM_043220547.1 mRNA upstream 51932 21917818 ~ 21918804 (-) True taar11
TU207994 other downstream 17971 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 23420 21841113 ~ 21841468 (-) True G140883
TU207950 other downstream 123884 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 352535 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 586147 21198710 ~ 21278741 (-) True G140616
TU208103 other upstream 246716 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 249152 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 249821 22115707 ~ 22115789 (-) True trnal-uaa_37
XR_006247154.1 other upstream 1523283 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 1524579 23390465 ~ 23401391 (-) False mcm9

Expression Profile