RNA id: XM_043220545.1


Basic Information

Item Value
RNA id XM_043220545.1
length 972
RNA type mRNA
GC content 0.42
exon number 2
gene id taar10
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21890151 ~ 21891194 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGACCTAAACAATTCAACTCAAACTAGGATTGACCGTGGACCTGCTCTCTGTTTTGAGTCGTCCAACAACTCATGTGAAAGATTTGTCTACCCATCAGAGATTCAGATTTTGCTTTATTCATTCTTCAGTGGCATTGCGCTAACCACAGTATGTGGAAACCTGCTGGTCATCCTCTCCATCATTCATTTCAAGCAGCTGCACACGCCAGCAAACTACCTAATCCTGTCTCTGGCCGTGGCCGATCTGCTCATCGGAGGTTTTGTGATGCCTCCCAGCATGCTGCGCTCTGTTGAGACGTGCTGGTACTTGGGAGACGTGTTCTATCGCTATTATGCCGTATGTCACCCGCTTCATTACCGGAATAAAATCACTCCTCCCGTTTGCCTCATTATGATTTCCCTAAGCTGGGGTCTAGCTGCGTTTGTTGGATTTGCTATGGTGTTTCTACAACTCAACATTCTGGGTGATGAGgagttttatttcaataatatagCCTGCAAAGGCGCCTGTATCATCTTTCAAACCGCAGCAGCCAGCACCATTTCCTCATTTCTTGCTTTCGGTCTTCCCGCAATAATTGCTGTCAGCATTTATCTCAAAATTCTCCTTGTTGCACGAAAACAATCAAAATCTATACAGCATTTAGTCCACGTGGGCAAAAATAACTGTGCTTCCATAAACAAAACTGAGGGGAAGGCCACAAAAACGCTTGCTATCATCATGGGGGTATTTTTTGTAAGCGTCTCACCCTTTTTCTTCTGTAATCTAGTAGACCCTTTTCTAAATTACACAGTACCACCGGCCATATTTGATGCTTTTTTGTGGATTGGATATTTTAATTCTCTGTGTAACCCTTTTGTGTATGCATTCTTTTATAGATGGTTTAGAAAAGCTCTGAGAATCATCATTTTAGCCaaaatatttcaagtaaattCTTCACAACTTGACATAATGGAAAGACGTGATTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207864 lncRNA upstream 37030 21850862 ~ 21853121 (+) True G140794
TU207862 lncRNA upstream 40016 21849762 ~ 21850135 (+) True G140792
TU207858 lncRNA upstream 43130 21846814 ~ 21847021 (+) True G140788
TU207856 lncRNA upstream 44698 21844833 ~ 21845453 (+) True G140786
TU207854 lncRNA upstream 49686 21840223 ~ 21840465 (+) True G140784
TU208004 lncRNA downstream 17780 21908974 ~ 21909333 (+) True G140900
TU208009 lncRNA downstream 42790 21933984 ~ 21978548 (+) True G140905
TU208011 lncRNA downstream 76504 21967698 ~ 21969950 (+) True G140907
TU208038 lncRNA downstream 169869 22061063 ~ 22061533 (+) True G140922
TU208050 lncRNA downstream 206717 22097911 ~ 22098292 (+) True G140931
XM_043220582.1 mRNA upstream 66032 21817203 ~ 21824119 (+) True bmf2
XM_043218883.1 mRNA upstream 96008 21787959 ~ 21794143 (+) True rmdn3
XM_043218884.1 mRNA upstream 96008 21787961 ~ 21794143 (+) False rmdn3
XM_043218885.1 mRNA upstream 110906 21774884 ~ 21779245 (+) True eif2b2
XM_043220054.1 mRNA upstream 115782 21771292 ~ 21774369 (+) True tmed10
XM_043220154.1 mRNA downstream 5757 21896951 ~ 21897961 (+) True taar10a
XM_043220075.1 mRNA downstream 8578 21899772 ~ 21900828 (+) True LOC122325159
XM_043220181.1 mRNA downstream 19207 21910401 ~ 21911411 (+) True LOC122325217
XM_043220067.1 mRNA downstream 23449 21914643 ~ 21915653 (+) True LOC122325154
XM_043220062.1 mRNA downstream 29101 21920295 ~ 21922335 (+) True taar1b
TU207855 other upstream 45450 21844146 ~ 21844701 (+) True G140785
XR_006247231.1 other upstream 691532 21168775 ~ 21198619 (+) False ipo13b
XR_006247313.1 other upstream 750353 21139684 ~ 21139798 (+) True LOC122325571
XR_006247327.1 other upstream 751023 21139014 ~ 21139128 (+) True LOC122325586
XR_006247312.1 other upstream 752386 21137649 ~ 21137765 (+) True LOC122325570
XR_006247241.1 other downstream 580592 22471786 ~ 22476774 (+) False ubxn2a
TU208163 other downstream 615573 22506767 ~ 22517675 (+) False fkbp1b
unassigned_transcript_2513 other downstream 1209012 23100206 ~ 23100288 (+) True trnal-cag_35
TU208810 other downstream 2181677 24072871 ~ 24074423 (+) False G141475
TU208811 other downstream 2181677 24072871 ~ 24074423 (+) False G141475

Expression Profile