RNA id: XM_043220547.1


Basic Information

Item Value
RNA id XM_043220547.1
length 987
RNA type mRNA
GC content 0.42
exon number 1
gene id taar11
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21917818 ~ 21918804 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGATGAATCTGAGTCAACCGTGGGCAGCAGAGACTTTCGGCCTCTGTTTCGCATCCTTGAATGACTCCTGTATGAAGATAGTTTATTCTCCTGTCTTTCGTGTTCCTCTCTACCTGGTCTTTACTATAACCATCTTAATGATAGTGTTCGGCAACCTGTGGGTCATCTGCACCATCTCCTCTTTCCAGCAGCTCCACACACCCACCAACTACCTGATCGTCTCAATGGCCGTATCTGACCTGCTCTTGGGCAGTTTTGTCATGCCTCCGAGCATGATACGCTCTTTGGAGACATGCTGGTACTTTGGAGAGTTTTTGTGCAAGTTTCACTCCGGCACAGATTTTATGCTGTGTAATGCATCTGTTTTGCACCTCACTTTCATCTCAATTGACCGTTACTATGCGGTCTGTCAGCCGCTCCGATATCACAGCAGAATGACCACACGTGTCAGTGTGTTCATGATCATGGTCAGCTGGGgcttttctgccttttttgGCTTTGGAATCATATTCTCAGAGCTGAAAATCGAAAGAAAAAGAACCGAGGAGCTGCATGTTGCTTGCAAGGGAGGGTGTTTAGCATTGCATGGAAGAGAAATCGGAGTCACATATTCACTTGTTTTTTACTTCCTCCCTATGTTTATAATTGTGAGCATTTACAGCAGGATTTTTGTTATAGCACTCAAACATGTTCGTGTTATTAATAGCTACCCCACAAGCTTATTGTCAGTTAGTAAAAAGGATCTAAAAGCCACTAAGACGCTTGCTATTGTCATTGGAGTTTTTATGTCTTGCTGGACACCTTACTTCATGTGTAACATCATAGATCCTATTGTTAACCATACAATACCAGCACTGTTATATGAGGTGCTAATGTGGGTGGCTTATTTGAATGCAGTCTTGAACCCCTTAATTTATGCTTTCTTTTACAGCTGGTTTAGAGAAAAgtccaaaatgttatttaaaaaactgtataaattgTGGTAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208005 lncRNA downstream 8459 21908991 ~ 21909359 (-) True G140901
TU207993 lncRNA downstream 72015 21845458 ~ 21845803 (-) False LOC122325102
TU207992 lncRNA downstream 72797 21844794 ~ 21845021 (-) True G140888
TU207991 lncRNA downstream 73185 21844015 ~ 21844633 (-) False LOC122324884
TU207990 lncRNA downstream 74896 21842432 ~ 21842922 (-) False LOC122324884
TU208019 lncRNA upstream 31942 21950746 ~ 21970149 (-) False LOC122325423
TU208020 lncRNA upstream 43392 21962196 ~ 21963699 (-) False LOC122325422
TU208021 lncRNA upstream 43392 21962196 ~ 21964129 (-) True LOC122325422
XR_006247296.1 lncRNA upstream 43393 21962197 ~ 21963706 (-) False LOC122325422
TU208017 lncRNA upstream 48540 21967344 ~ 21970003 (-) False LOC122325423
XM_043220496.1 mRNA downstream 30295 21886498 ~ 21887523 (-) True LOC122325446
XM_043220499.1 mRNA downstream 33390 21883406 ~ 21884428 (-) True taar13a
XM_043220485.1 mRNA downstream 37639 21879154 ~ 21880179 (-) True LOC122325436
XM_043220356.1 mRNA downstream 46054 21870742 ~ 21871764 (-) True LOC122325342
XM_043220544.1 mRNA downstream 51932 21864888 ~ 21865886 (-) True taar15
XM_043220548.1 mRNA upstream 16570 21935374 ~ 21936459 (-) True LOC122325511
XM_043218684.1 mRNA upstream 82409 22001213 ~ 22006248 (-) True bmp2b
XM_043220027.1 mRNA upstream 134253 22053057 ~ 22058826 (-) True chgb
XM_043219962.1 mRNA upstream 173268 22092072 ~ 22097205 (-) True gzf1
XM_043219319.1 mRNA upstream 476031 22394835 ~ 22470270 (-) False atad2b
TU207994 other downstream 70901 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 76350 21841113 ~ 21841468 (-) True G140883
TU207950 other downstream 176814 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 405465 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 639077 21198710 ~ 21278741 (-) True G140616
TU208103 other upstream 193798 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 196234 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 196903 22115707 ~ 22115789 (-) True trnal-uaa_37
XR_006247154.1 other upstream 1470365 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 1471661 23390465 ~ 23401391 (-) False mcm9

Expression Profile