RNA id: XM_043220548.1


Basic Information

Item Value
RNA id XM_043220548.1
length 1086
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC122325511
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21935374 ~ 21936459 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgtactatatatatgttCACTTGACTTTAGATATAGTTATAAAGAACATCATCTCAGCATCTGGAGCAGATGTGATAACTTCAAATGAAACTGAGAACATCCTTCTCTGCTATCCACTCCAGCTGGACTCCTGTCCAAAACTGCATCGTTTGACTGTGATTAAAGTGGCGATGTATGTTTTGATGGTGCTGATGATCCTCACAACAGTTTTTGGGAACCTGCTGAtcatcatctccatctctcacttcaAACAGCTTCAGTCTCCAACTCATCTGATCGTTCGCTCTCTGGCTGCCAGTGACTGTCTGCTGGGCTCTTTGGTCATGCCGTACAGCATGGTGCGATCTGTTGAAGGCTGCTGGTATCTGGGAGATGTTGTGTGTAAAGTGCATTCTAGTTTAGACATGAGCTTCTGTATCTCCTCCTTACTGCATCTTAGTTTAATATCTGTTGACAGGTACATGGCCATTTGTGACCCTCTGAGATACAGAATGAGGGTCACAAACAACACTGTGACTGTATTTATCACATTAATatggatgttttcttttctatacAGTTTTTATGTTGTCTTTTCAGGGATAAACACAGTTGGTTTGGAGGCATTCATTATGCAGGTATATTGTGTGGGAAgctgtgtattgttttttaacaaacaatGGGGTCTTATATGTCCAATTGTCACATTTTTCCTTCCTGGGACGATCATGAGTGCTTTGTATATTAAAATCTTCCATGTTGCACGAAAACATGCAAAGATTATGTCAGAAAGAATGACTGGAGGGATGAAGAGTCAAAGCTCTgctcacagagagagaaaagcagctAAAACTCTGGCTATTGTCatgggtgtttttttgttctgctggCTGcctttttttactgttaatgcTCTCGACccttttttcagtttcttcacCCCAGCTGTTGTTTTTGATGCTGTAATTTGGTTTGCATATTTGAACTCCGCTTGTAACCCCTTGATCTATGGGTTTTTCTACCCTTGTTTTCAGAGTGCATTTAAGATTCTCATTTCCACTTATATCTGTGGCAACAAGGTTTCAAACATGacaacatttacataa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208005 lncRNA downstream 26015 21908991 ~ 21909359 (-) True G140901
TU207993 lncRNA downstream 89571 21845458 ~ 21845803 (-) False LOC122325102
TU207992 lncRNA downstream 90353 21844794 ~ 21845021 (-) True G140888
TU207991 lncRNA downstream 90741 21844015 ~ 21844633 (-) False LOC122324884
TU207990 lncRNA downstream 92452 21842432 ~ 21842922 (-) False LOC122324884
TU208019 lncRNA upstream 14287 21950746 ~ 21970149 (-) False LOC122325423
TU208020 lncRNA upstream 25737 21962196 ~ 21963699 (-) False LOC122325422
TU208021 lncRNA upstream 25737 21962196 ~ 21964129 (-) True LOC122325422
XR_006247296.1 lncRNA upstream 25738 21962197 ~ 21963706 (-) False LOC122325422
TU208017 lncRNA upstream 30885 21967344 ~ 21970003 (-) False LOC122325423
XM_043220547.1 mRNA downstream 16570 21917818 ~ 21918804 (-) True taar11
XM_043220496.1 mRNA downstream 47851 21886498 ~ 21887523 (-) True LOC122325446
XM_043220499.1 mRNA downstream 50946 21883406 ~ 21884428 (-) True taar13a
XM_043220485.1 mRNA downstream 55195 21879154 ~ 21880179 (-) True LOC122325436
XM_043220356.1 mRNA downstream 63610 21870742 ~ 21871764 (-) True LOC122325342
XM_043218684.1 mRNA upstream 64754 22001213 ~ 22006248 (-) True bmp2b
XM_043220027.1 mRNA upstream 116598 22053057 ~ 22058826 (-) True chgb
XM_043219962.1 mRNA upstream 155613 22092072 ~ 22097205 (-) True gzf1
XM_043219319.1 mRNA upstream 458376 22394835 ~ 22470270 (-) False atad2b
XM_043219318.1 mRNA upstream 458376 22394835 ~ 22470270 (-) True atad2b
TU207994 other downstream 88457 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 93906 21841113 ~ 21841468 (-) True G140883
TU207950 other downstream 194370 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 423021 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 656633 21198710 ~ 21278741 (-) True G140616
TU208103 other upstream 176143 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 178579 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 179248 22115707 ~ 22115789 (-) True trnal-uaa_37
XR_006247154.1 other upstream 1452710 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 1454006 23390465 ~ 23401391 (-) False mcm9