RNA id: XM_043220550.1



Basic Information


Item Value
RNA id XM_043220550.1
length 1047
RNA type mRNA
GC content 0.52
exon number 4
gene id opn8a
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22557504 ~ 22567131 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TGGATGACATTTGCGTTCGATTCAGACGGAGGAGCTGGAATGGATCATTACAGCTCTAAACTGTCTCCTGCTCTTGATTACGGTGCAGGGACGTTCTTGCTGGCGGTTGccGTTCTCTCCATTCTGGGCAATGCAGCCGTCCTGGTAACAGCTGCCTGGCGTCACAGCGTTCTAAAAGCTCCTGAGCTCCTCACGGTCAATTTGGCTGTAACTGACATTGGCATGGCTCTCAGCATGTACCCACTCTCCATCGCCTCTGCCTTCAACCACGCCTGGATTGGAGGTGACCCTTCCTGTCTGTACTATGGCCTGATGGGTATGATCTTTAGCGTGGCCAGCATCATGACCCTGGCCGTTATGGGATTAGTGAGATATCTGGTGACAGGAAACCCTCCCAAATCAGGGAGCAAGTTTCAAAGAAAAACTATCAGTGTATTGATTGGTGTGATCTGGCTGTATTCACTGCTCTGGGCAGTATTTCCTCTTCTGGGATGGGGAGGATATGGACCGGAACCCTACGGTTTGGCCTGCTCTGTGGACTGGGCCGGGTACCAGCACTCCTTAAACGGCTCTTCGTTCATAATGGCTTTGGCCATCCTGTGCACCCTGATCCCATGTGCAGTCATCCTGTTCTCCTACACTGGCATCGCCTGGAAGCTCCACAAGGCCTATCAGTCCATCCAGAGCAGTGATAATCTGCCCAACTCTGGGGCGGTTGAGAGGAAAGTCGCTCTGatgGGCATCCTGATAAGTGCCGGCTTTATTGTATCCTGGGCGCCTTACGTGTTCATCAGTCTCTGGACCATGTTTCACTCTGATGGCAAAGACAGCGTGGCACCCATTATCAGCTTGCTACCCTGCCTCTTTGCGAAATGCTCAACGGTGTACAACCCCTTTGTCTACTATGTTTTTCGCAAATCTTTCCGCAGAGAGCTTCGGCAAATTCGGATTTATTGTTGCTCGGATGCTGTGAGCAAAATGGCACTCCGTAGAGGAGGAAAAAGCTCTGAAAAAACTAGCAGGGCACGAGAGACGGCGGAAGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208238 lncRNA downstream 15810 22541463 ~ 22541694 (-) True G141083
TU208237 lncRNA downstream 16354 22540688 ~ 22541150 (-) True G141082
TU208235 lncRNA downstream 17177 22539920 ~ 22540327 (-) True G141080
TU208234 lncRNA downstream 17590 22539593 ~ 22539914 (-) True G141079
TU208233 lncRNA downstream 17937 22539367 ~ 22539567 (-) True G141078
TU208473 lncRNA upstream 93484 22660615 ~ 22662241 (-) True G141255
TU208522 lncRNA upstream 172510 22739641 ~ 22740927 (-) True G141283
TU208585 lncRNA upstream 263783 22830914 ~ 22831421 (-) True G141307
TU208599 lncRNA upstream 311601 22878732 ~ 22890133 (-) True G141319
TU208601 lncRNA upstream 316931 22884062 ~ 22890133 (-) False G141319
XM_043219692.1 mRNA downstream 5230 22541777 ~ 22552274 (-) True opn8b
XM_043219741.1 mRNA downstream 51702 22498745 ~ 22505802 (-) False LOC122324950
XM_043219740.1 mRNA downstream 51702 22498745 ~ 22505802 (-) True LOC122324950
XM_043219319.1 mRNA downstream 87234 22394835 ~ 22470270 (-) False atad2b
XM_043219919.1 mRNA upstream 102911 22670042 ~ 22683646 (-) True clic5b
XM_043218592.1 mRNA upstream 202788 22769919 ~ 22776432 (-) True lin9
XM_043220475.1 mRNA upstream 209990 22777121 ~ 22791942 (-) True parp1
XM_043219706.1 mRNA upstream 226106 22793237 ~ 22802967 (-) True si:dkey-206f10.1
XM_043219255.1 mRNA upstream 273765 22840896 ~ 22845553 (-) True pomcb
unassigned_transcript_2512 other downstream 441715 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 442384 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 444460 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 710587 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 716036 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 822038 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 823334 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 823336 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 1224946 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 1437556 24004687 ~ 24006665 (-) True G141502

Expression Profile