RNA id: XM_043220564.1


Basic Information

Item Value
RNA id XM_043220564.1
length 5734
RNA type mRNA
GC content 0.48
exon number 35
gene id rock2b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17455737 ~ 17481534 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCCGAAGAATTCCTCTGGCCCAGGGGAGGGACGCACAAAGAAACACGCCGCGTGCATTCACTTGCATGTACTCGAACCCCTCTGCTTCATTTGTCCAAAAATAACAGAGGAAGAAcgagagtgtttttttttaacacaggcTGGGTTTTCCCCTGTAATTTTTGAACCGGAGCGGGAGAGACGCTCGGCTTCCTGAACGCGTGGGTCCGTCTAACCTTTGATTTTACGCCGAACGCCGCTGTCATTTACGCAAGAGGACGAGACGCAAAACCACGGTGTCCCGGTCATTTGCGTCGCGTGTAAGGTCTTCGGCCTGAGCGTTCATTCATACAGAGCCGGCGAGCTTCGAGAGGCGTCGCGTTCAGTTACGACAGGTAGTGGCAAGTTTGATTCGGACGTTTGAAGTCTCTCAATCGCGGCTGTCTAGCTGATGTCTACCTGGACCTTCACGACACCGAGCCGCCGCAATGTCGACCGGAGCAGGAAAGAGACTAGAGAAGCGGGTGAGAGTACTGGAGTCGCTCATCAAGGACCAACGATCGCCGCTGAATTTGGAGAGTTTGCTGGATTCAGTAACTGCTCTGGCCCTTGATCTGAATCATCCCGCGCtgagaaagaacaaaaacatagaTTCTTTCTTAAACAGATATGAAAAGGCTGTGTGTCGCCTCAGGGAACTACAGGTGAAGCTAGATGATTTTGACAGAGTCAAGCTGATTGGTCGTGGAGCGTTTGGCGCAGTGCAGctgGTACGACACAAAGTATCCCAGCAAGTGTATGCCATGAAGCAGCTCAGCAAATTTGAGATGGTCAAGCGCTCTGACTCCGCCTTCTTCTGGGAGGAGCGTGACATCATGGCATTCTCCAAGAGTCCTTGGATAGTTCAGCTGTGCTGTGCCTTCCAAGATGAGAAGTACCTTTATTTGGTGATGGAGTTCATGCCCGGTGGAGACCTGGTGACTCTGACCAGCAACTATGACATCCCAGAAGAGTGGGCTCGATTCTACACAGCAGAAGTTGTGCTGGCACTGAACGCCATCCATTCTCTAGGCTTCATTCACAGGGACATCAAACCAGATAACATGCTGCTCGACCGCAACGGACACCTGAAACTCGCTGACTTTGGAACATGCATGAAGATGGACTCGTCTGGTATGGTCCGCTGTGACACTGCTGTCGGGACTCCTGATTACATTTCCCCAGAGGTTTTGATGTCTCAAGGAGGAACGGGTTACTATGGCCGGGAGTGTGACTGGTGGTCTGttggagtttttatttttgagctgCTAGTGGGTGACACACCGTTTTATGCTGAGTCCCTGGTGGGCACCTACGGGAAGATCATGGATCATAAAAACAGCTTAACTTTCCCAGATGATATCGAAATGTCAAAGGAGGCCAAAGACCTCATTTGTGCTTTTCTGTCTGATAGGGAGGTGAGGCTTGGACGGACCGGAGtggatgaaataaaatgtcacccCTTCTTCAAGAACGATCAGTGGACCTTCGACACCATACGAGACAccATGGCTCCAGTGGTGCCAGAGCTGAGTAGCGATATTGACACCAGTAACTTTGATGATGATATAAAGGATGATCCGTTAGGAACCGAGACCTTTGCCCCTCCCCGTGCCTTCACAGGAAATCAGCTACCATTTGTGGGCTTCACATATTTCAGGGAGGACCAaTTGCTAAACCAGAACAATAAGTGTTCAGAAGAGGACTCTAATGCTGATAGCGTCAATGAGGATCATAATTTAAACCAGGCAGAgTCCAGTGACCTGcaaaaaaggctgaaaaagtTGGAAGACAAAGTGAAACATGAAATGCTAGCAAAGGAGGAACTGGAAAATAAATGCAGAACAGCAAATCAGCGGCTAGAGAAGCTGTCCAAAGAGCTTGAAGAAGAAGTGAATGCGAGGCAGGTGGTGGAAGACTCTCTGAGGGAactggagaaagagaaagcttTACTGGCGCACCAGCGTTCTGCGAGCATAAGAAAGGCTGGCctagaaacagacagaaagcgTCAGCTTGAGAATGAGGtgaGCAGCCTGAAAGAGCAGCTAGCCGAACTGAAGAAGAAGACCCAGAACTCTCATATCTCTGCTGAGAAGAACATTCAGCTGGAAAAACAGTTGGAGGAGCTGAATGCTAAGTACCAGGCGGAGGTGGAGGAGTCTGAGTGGCTGAAGAAGGCCCAGGGCGAGGCATTGAGACAGTCCCAGCAGCTGGAAGTCTCTCTCAGGGAGCTTCAGGAGCGTCTGGCCCAGCTGGAGAGCAGCCGGCTGGGTCTGGAACAGGAGAGACTGAGCCTGCAAACCTCACTGGAGCTGGAGAAGCGAGAGAGAAGTCTCAGCTCAGAGACCATCAATGACCTACAAGGCCGTGTCTCTGGACTGGAAGGCGAGTTAAAGCACATAAAGAGTTCTCTATCAAAGGCTGAAGCAGAGAAAAGACAGTTGCAGGAGGATCTTACTGCCCTggaaaagGAGAAGAGCAAGCAGGAGATTGATCTTTCTTTTAAACTCAAAGCCATTCAGCAGAGTCTAGAGCAGGAGGAGGCAGCGCATAAAGCCACTAAATCCAGATTGGCtgacaacaacaaaatcaacCAATCCATTGAGGAGgccaagtctgaggccttgaAAGATATGGAACATAAGCTGCTGGAAGAACGATCTGCGAAGCAACAGTTGGAAAATAGACTGATGCAGCTGGAGAAAGAAAACTCAGTGTTAGACTGTGACTACAAGCAAGCCAAACACGAGCTTCAGGAGCTCCGCTCTCTCAAAGAAAAACTCACCGAGGAGGTGGAGGTGCTGAGTGTACGTGTGCAGCAGGAGACTCAGAGGAAGACTCTGTTTCAGGCAGATCTCAATGTACAGAGGCAGGAGGTCAGCACCCTGCGCTCCTCAGAGAAACAACTCAAACAAGAGCTCAACCATCTGCTAGAGCTCAAACACAACCTGGAGAAACAAAATCAAGAACTACGCAGGGAGAGAGAAGATGCTGACAAACAGCTGAAAGAGCTGAAGGACCAGTTGGAGTCGGAGCAGTACTTCACAAAACTGTATAAGACTCAGATTCGAGAGCTGAAGGAGGACAGTGATGAAAAGGCCAAACTCTACAAAGATGCTCAGCAGAGAATAGAGGACCTGCAGGAAGAGagGGACTCATTAGCAACACAGCTAGAGGCGAGCCTGACAAAAGCGGACTCTGAAGAGTTGGCGCGCATCATCGCTGAGGAGCAGTACTCAGACCTGGAGAAAGAAAAGATCATGAAGGAGCTGGAGATCAAAGACATGATCGTCAGACACCGGCAGGAACTCAGCGAAAAGGACAATACCATCAGCTCGCTGGAGGAATCGAACCGCACGCTGACTGTGGATGTTGGAAACCTGGCTAATGAGAAAGAAGAGCTCAACAATAAGCTCAAACATATACATCATAAGCTGGACAAGgccagagaagaagaaaaacagacaaaatctTTGGTCCTGTCCTTCGAGAAGCAAATACAGTCTGAGCGAACCCTCAagattcagGCGGTGAACAAGCTGGCGGAGGTTATGAAGAAGAATGATGTCAGAACCCCACAACTCAACAACACAGACGTCCGcaggaaggagaaggagaacAGACAGCTCCAGTCGCAGCTCCGCACTGAGAAAGATAAACTCAACAACGCTATCATCAAATACCAGAGAGAAATCAATGAAATGCAGgctACGTTAGCAGAGGAGTCTCAGGTGCGACTGGAGATGCAGATGGCCCTGGACAGTAAAGACAGTGATATTGAGCGTCTGCGCTGTCAGATCACTTCTCTGAGCATCCATTCTCTGGACACCACCAGCATCAGCAGCACCGGCAACGACCTGGAAAGTGATGACGCTTATCCAGTGCgcatcacacactcacacacctcgGAGTCTATGTCCTTCACATACCAGCGAAGCTCCAAGTCAGTGTGTATTGATACCCGGCTGCCGGATCGTACCTCGTTCCCCTCCGActcagaggaagaggaggacgagGAAGTCGAGTGGGGGCAAAGGCCCGCCATCACATATGAGAAGCCTAATGACCAAGAGTCTGCAGATTCTAGTCTTGAAGGATGGCTCTCAATGCCTACCAAAAATACCAAACGGTTTGGATGGGAAAAGAAGTATGTGGTGGTAAGCAGCAAGAAGATCCTGTTTTATGACTCGGAGCAAGACCGAGAGCAATCCAGCCCCTTTATGATTCTGGACATAGACAAACTCTTCCATGTGAGACCTGTCACTCAGACAGACGTGTACCGTGCAGATCCCAGAGAAATCCCACGCATCTTCCAGATATTATATGCTAATGAGGGAGAGAGCAAGAAAGAGGAGCTTGCTGTGGAACCCTTATCAGCAGCTGAAAGGTCGTCGTTTATCCCACACAAAGGTCATGAGTTCGTGCTCACGCTTTACCACTTCCCCTCAAGCTGTGAAGCATGTCCAAGGCCTCTGTGGCACGTCTTTAAGCCCCCACCAGCCTTGGAGTGCAGACGCTGCCGAATCAAATGCCATAAAGACCACATAGATCACAAGGAAGAGGTCCTAGCTCCTTGCAGAGTGAACTATGACATGTCCACAGCAAAGGAGCTACTGCTGCTGGCCAACTCCACAGAAGAGCAGCAGAAATGGGTTAGCCGCTTACTCAAGAAGGTTCCACGTAAACCTATAGCCCACTCCTCAAGCATAGCCATAGCTTCTCCTTCCTCCGAGACATCGTCAGCTGGCCTGTCTCCTCAACCCTCTCCTCACCTGTCAGCCCATTCATCTCCCAGACCTTCacacagagcagccatcaaaaTGCATTCCACCCGACAGCAGCCCTCACCCAAGACCAGATTGCTTGAGTTGGGCCTGAAGGACTGGGGTTGGTCTCTTGATGTTGAAATGGATGATGACGATGTATTAGACTTCTGAGGACTTGAGTTTGTGGGctaACCTTGGTGAAGGTTGGATAGGCGATAATGCATCTGGGAACTATGAAAGCGGAGAATGTCATAGTGTTCATTTTGGCAAATGGCAGGACTTCCAAGTGCCAAACTCCACAAGTATAAATGACTGGGGAAGGAGGAGGGAGGTCTAATCTTTAATACAGAACAAGCCATAAATCACCTAAAAAGGGGGTAATTTAAAAGTGAAGCCATTTTATGAGTGTTTTATGTCTTTGTAGACTACacaatttttcaaaatcattttcaagTTAAAGAACCTTAAACTTTCTGGTCTTCCTGCAAAGTTGTCAATAAGTGTGAGTGCTtgcctgagtgtgtgtttgaaaccGAATATATACCTTGGCTCTGCAATTACATGATCATCTGAATTTCTATACTCGAGtattatatctatttttgtTAGGAAAAACAGATCAATATTTAGTGacagattatatttttatcatgcaTTATCAAAGAACACTTTTGAAAACTGCTTTTCAAAGAGTTGTTTGCCAGAACTGTCTGctcaaaatatatgcattattaaagaCTGATATTACATGATGCAATCCGTagcacattttagcattttattaattgctgtgacaaaaaaaaaatacacaatctGTATACATAGTGGAACATGAAGGCCTCTGGTccaaacattttctgttttatcattttgccATGTTGCCACTGACAAAGCATTGAAAACATTGTGAAAttcttaataaagaaaaaagctttatttgatGAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247186.1 lncRNA downstream 46242 17396342 ~ 17409495 (-) False LOC122324490
XR_006247185.1 lncRNA downstream 46242 17397428 ~ 17409495 (-) True LOC122324490
TU205717 lncRNA downstream 59739 17394864 ~ 17395998 (-) True G139323
TU205702 lncRNA downstream 119417 17336007 ~ 17336320 (-) True G139317
TU205687 lncRNA downstream 329827 17125437 ~ 17125910 (-) True G139302
XR_006247201.1 lncRNA upstream 74321 17555855 ~ 17559470 (-) False LOC122324574
XR_006247200.1 lncRNA upstream 74321 17555855 ~ 17559470 (-) False LOC122324574
XR_006247199.1 lncRNA upstream 74321 17555855 ~ 17559470 (-) True LOC122324574
TU205818 lncRNA upstream 133614 17615148 ~ 17615699 (-) True G139386
TU205819 lncRNA upstream 134259 17615793 ~ 17616508 (-) True G139387
XM_043220573.1 mRNA downstream 300 17453042 ~ 17455437 (-) True LOC122325537
XM_043220568.1 mRNA downstream 15726 17428506 ~ 17440011 (-) False paplnb
XM_043220567.1 mRNA downstream 15760 17428506 ~ 17439977 (-) False paplnb
XM_043220569.1 mRNA downstream 18752 17428506 ~ 17436985 (-) True paplnb
XM_043220607.1 mRNA downstream 27614 17426342 ~ 17428123 (-) False erh
XM_043219652.1 mRNA upstream 17945 17499479 ~ 17515480 (-) False fam102bb
XM_043219651.1 mRNA upstream 17945 17499479 ~ 17515471 (-) True fam102bb
XM_043219300.1 mRNA upstream 42084 17523618 ~ 17554947 (-) False atf6
XM_043219299.1 mRNA upstream 42084 17523618 ~ 17554947 (-) True atf6
XM_043219098.1 mRNA upstream 104850 17586384 ~ 17595986 (-) True LOC122324570
TU205714 other downstream 27666 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 27666 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 993521 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1088965 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1090270 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 328740 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 861938 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 924493 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 925220 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1594512 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile