RNA id: XM_043220568.1


Basic Information

Item Value
RNA id XM_043220568.1
length 3788
RNA type mRNA
GC content 0.45
exon number 14
gene id paplnb
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17428506 ~ 17440011 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATTCTGTCCGTCTCCAGCGACCTGTGTGCCAGGGCCTTTAATTCACCTTCACTTATCAACCATATCTTCTCAAAACGCTCGGCATCCAGTGCTGCAAAGTGTctttccaaacacacaaaaacaagGGCAAGATCAACAGAGCAGTATGACGCAGCAGAAGGAGAAGTTGGAGTCTCTGATGAGGAGCATGGAGGTCCTTCTGAGGGAGGTGGAGCAGCTACGTGAGCACTGTGGTCATTACAACCTGGAGCTGAGTCGCCACATCATGGAGCTCCGCCTGGAGAACAGAATACTGACCGACAAATACAACTCCCTTGACAAGGAGCTGCAGGAGGCCTTGGAGACCATCGAGGACCTCCAAGACACCAAATACGCCTTGGATTCCAAAGAGAGACAGGCTGACAAGCTCAACCGACAGCTTTGATAAAACTACAGGAGCAACAATTTTAAGGTTAATCAACGTACGTGCGAATGACTGACTTATAAGATATTTGTCCCTGCATAGTAAGACGATACACAAGTAAAGATTTTAACATCCAGGAAATTACACGGCTGAAATTTTATCGAACTCCCTTATGAAATGTTATAGGCACATAAGCAATGCATACTGTCGATCCAAGTTCATTGTCTCCATAAGTAGTATATGTGGTGTCTGGATCTTAATTGTTGGGGTGGAAGTGAAGCCAATTCTGTAGGTAAAGTTGGAACAGTGAGTCTGCATTCTCCTTCACAATGACAGCGACCATCTGTCATTTTGGTTGTTGAAAAGTGACAGGGACTAAAATAGCAGCTTAGAGGACGGAGTGTTAAAACACTTCCACCCCTATGAtttaatactgtatgtttagCGGCACTAAGCGGAACATCAGTGGTCAGAACATTGAAAAGAGCCTCACTGTGAGATCTCTCACACAATGCACACTTGCGCTTATATAATAatgttctctctcttctgttCTGATTAAAGGAATATCATatccaaaaatgtacttttgctGCAACCGTACAAATTCTGTAGTGCATTACTTGTTGGATCCACTGCAGTCAATGTGTCCCGCCAGAATGAAAGatcaaacggctgataaaataatccacaagtaatccgtATCATTCGAGTACGTCAGTTAATGTATTGTCAAgccaaaagctgcatgtttgttaaaacaaaacaaaatttcactttattttcatgaaatgTTCCTTTACGCAACAGCTAAAACTGTATATTTCTGTTGAACTGATTTGAAAAATGCATGGTGAAGAACACTATGCAaacttgacctttgacctttcttTTAGAAGActgcaaaatgattaaataaaaatgtaaataaaatctaaataaacatgTTGTGTGGAACtcaatctgtttttcatttttaacaaacagcGATCGCTAATTAAGTGTGTTGAAggttttgtattaaatttaattaatttccctTTTATCATGATAAGATTCCTGATATTGTCCCAGGAGGGGTTAATTGAAACCTGAGATGAGTAGTGTGTATTGGTAagtgtgtgtacgtgtgcaCAAAGGGAAAGCTGTTGAGTCCTGAGTGAATCTGTGTCACAACTCTCTCTCGCTGTGACTGGGAGGACTTGGGATATTCAACATTGACACACTGAGAAGGTAAGTGACCATTCATAATAGAAGTCTAAATAATTTGCTGTCAGCaaaaatttagaaatatattaaaataagatgtGATTTGTATTATGAAGATGATGCTCCACTCTCTTCTCGGGATCCTGAGCTTGGTCTCTGCAGTTCTCTGTGTGAGGCAGCCATCTAATGATTACTGGGGTGAATATGGCCCGTACGGAGCATGCAGTCGCACCTGTGGCACTGGAGTAGCAGTGAGAACCAGGATCTGCAACACTATGAGGACCGATGGTGGGCACAACTGCGTTGGACCATCCAAGTCTTACAAACTCTGTAACATACAGGAGTGCCCTGTTGGATCTATGGATTTCCGTGAAGAACAGTGTGCTCATTTTGACAGAATGGATTTCAAGGGAAAACGTTACACATGGCAGCCATACTATGGAGCTTCAAACCCATGTGAGCTAGTGTGTGTGCCCAGAGGAGAGAACTTCTACTACCGTCACAGACCCGCTGTAGTGGACGGCACACCATGTTATGTGGGCCGCAGAGACGTCTGTGTGGAGGGAGTCTGCAGAGCGGTGAGCCATGGGGAGATTGTGGGTTTTGAGGATCACTCTCTTCCTGTTGTGTCTAGACATGGCACTGGAGCTGCAGCCAATCTGGACACCTACAGGTACACATACAGCACTTTTTCCGAGTGCTCACTTCACTGTGGTGGAGGAGTGCAGACCCGTAGTGTGTACTGCATTAATGAGAGAACATCAGCAATGGTCGAAGAATCTCACTGCACTGCATTAGGCTTCAGCAAACCAGCTTCTCAGAAGGCCTGCAACGAGCACCACTGTGCTGAGTACAGTGTCGGTCCCTTTGGTGATTGTTCGATGACGTGTGGTGAGGGACAGCAGACACGAGAGGTCTTCTGTGTCGGGGGCAGAGGAGAGCGCATCCCTGAGCACCACTGCAGGGGTCTCACACGTCCACATGATGTCAGATCCTGCCAGAGACCAGCTTGCCACCAAGTTTTTAGATACTACATCAATGACTTCAGCCTGTGTTCTCGTAGCTGTGGAACTGGTACTCGCGAGCGCAGAGTTGTTTGCATGGATTTGGATCGCAATCATTATCCGGACGAAAGATGTTCCGCTTTCTCCAGACCTCATGCTGTGGAGAGCTGCAACACACAGCCCTGCCCTGGTGTACAACTGGTGCCCAGTGTGCAGGACTCCAGTGGATATGAAAGCTCCTTGCGTGGATTTGTACCTTACACCCTTGATGCAACCTCAGTTCACAGACCAAGTGATCCATACCCCTCGGTGACTGGACCGCACTGTGCCCAGTCATACTATGGCTGCTGTCCAGATGGCCACACTGCTGCCTCAGGGCCTCGTGGGGAAGGCTGTTCTCACGATGACTGTCATAGGTCTAGATTTGGCTGCTGCCTTGATGGAGTAACAGCTGCTGTTGGTTTTGGAAGAGCAGGATGTCCTGACTACCCCTACAGAgATAGTCCAGTCCCTCAGCCCTCTGCGAGTGTGTGCGCTTTGGCACAAGACGTTGGGTCCTGTTATGAATGGACATCTCGTTTCTACTTTGATTCTTCCTCCGGCTCTTGCTCACAATTCTGGTTTGGTGGTTGTGAAGGGAATGGCAACAACTTTGTCTCCAAGGAGGAATGTGAGCGGACATGTAAGGCCTCTGCCAGAGGCCTTGCCCCAAGAGAACCAACATCCAGGAGAGGGATCAACGGAGGAAGAGGATATAGAATGAGATCCCGTGCATAAAGGGGTTAAAAAGGGTCATTGAAATCCCACAGCTGCTGGGGTGGGATTTCCAGCTGTGCTGTAAAGGTGCTAATATCCAGCTCACATGTAGGCAAAAGTCATTGATGCTGATATCAAAGAAATCTTTAAAATTTTGaggtttaaaatatcttaatgaggaaaataatcaaacttttttattatacattcatAGAAGCACATTCACTTTATCATATTTGTCAGACATGACAGTATCAAAGCAGTAAGAACAATTTTCAGACATTCCAATTTCAAGAGCTGTTTCactaatttcataaaaataagatTGCTGTTGCTGAGAACTTTGTTCTTCATTTGTATTCTTTGTGCACACATTGTACTTCAGTTGTCTTGCTatgctattaaaatgttaac

Function

GO:

id name namespace
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247186.1 lncRNA downstream 19011 17396342 ~ 17409495 (-) False LOC122324490
XR_006247185.1 lncRNA downstream 19011 17397428 ~ 17409495 (-) True LOC122324490
TU205717 lncRNA downstream 32508 17394864 ~ 17395998 (-) True G139323
TU205702 lncRNA downstream 92186 17336007 ~ 17336320 (-) True G139317
TU205687 lncRNA downstream 302596 17125437 ~ 17125910 (-) True G139302
XR_006247201.1 lncRNA upstream 115844 17555855 ~ 17559470 (-) False LOC122324574
XR_006247200.1 lncRNA upstream 115844 17555855 ~ 17559470 (-) False LOC122324574
XR_006247199.1 lncRNA upstream 115844 17555855 ~ 17559470 (-) True LOC122324574
TU205818 lncRNA upstream 175137 17615148 ~ 17615699 (-) True G139386
TU205819 lncRNA upstream 175782 17615793 ~ 17616508 (-) True G139387
XM_043220607.1 mRNA downstream 383 17426342 ~ 17428123 (-) False erh
XM_043219275.1 mRNA downstream 3695 17414467 ~ 17424811 (-) True smek1
XM_043219276.1 mRNA downstream 3696 17414767 ~ 17424810 (-) False smek1
XM_043219622.1 mRNA downstream 141614 17152343 ~ 17286892 (-) True nbas
XM_043219623.1 mRNA downstream 141620 17152343 ~ 17286886 (-) False nbas
XM_043220573.1 mRNA upstream 13031 17453042 ~ 17455437 (-) True LOC122325537
XM_043220564.1 mRNA upstream 15726 17455737 ~ 17481534 (-) True rock2b
XM_043219652.1 mRNA upstream 59468 17499479 ~ 17515480 (-) False fam102bb
XM_043219651.1 mRNA upstream 59468 17499479 ~ 17515471 (-) True fam102bb
XM_043219300.1 mRNA upstream 83607 17523618 ~ 17554947 (-) False atf6
TU205714 other downstream 435 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 435 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 966290 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1061734 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1063039 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 370263 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 903461 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 966016 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 966743 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1636035 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile