RNA id: XM_043220580.1


Basic Information

Item Value
RNA id XM_043220580.1
length 3335
RNA type mRNA
GC content 0.45
exon number 18
gene id adgrf3b
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18343463 ~ 18350122 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCACTGCATTCGTCAACTTTCCTTAATTCTCATTCAGCACCACCTTTCACTCTGGAAACTGGTTCACAGGGAACATGTTGTTATGACAGATAACATTGCCTAAAACTTGCTGATCCTcgcttttaaaatgaagattGTAAGGATCAAGACACTGTCTGGTGCAGGAATGCTGCTTTTTGCtgcacttttcatttttagccAAACTTCATATGTGGCTTCCACAGACGTGACCCATTGGGCAGAGGTCATGATTGAGgggaataaaacattaaatgttgcaGTCTATCTGCCTGGACTTATAGGGACTGTTTTGGATACAACAGGAGTAACTATCACAAACGCTGAAATAGCAGCAGAGTGTGAGATAATCGGCCAAAATTCAACATGCTGGTGTGGACCGGAATATGTTTGGAGCAATCTTGTGTGTGACAATGTGAATAAATGCTGCAATGTGGACAAATGTGTGGCAAATATTTCATACTACACACCTCTGTGTTTGCCAAAAGTGAACGTTTCACTTATTGGTGTACTCACTGGGAGCTCCTCAAATGTCCAAAGCATGttgcTGAGTGCTTTTAATGTGCTTAATGCCTTCAACTCATTGACTTTGGATGGCACCCTCTACACAGGGTTAAATACTTATGCTCACAATTTCACAGTCTCTCTTAGCTCTGTGTTTGCCACCCCCAAAGTTCAAGGCATAATTTCTACGCTGTTGACAAATCCAACCATTTACAGCCTCAGTCTCAAGTCACTAGGCATGGTATATATGGAGGCACCTAcaggaaaaatatgttataattcaaaacaacagctgaaCTGTACCAGTATAGAGGCTATGAGCAAGTGTGTGTGGCAGATGTCCAGAGAGAGTGAAGCAACGTTGACTCTGGGACCAGGAAGTGAAATACAGTTGTCAGATACTTGTACAGAGCTCTCAACAGTCACACTTCTAAAGACAAATGGATACTGGTCAGGAACATACATCTGCCTTTTCGTCACTGGGAACATAGCTCACATGGCCATGGCACCTATTCAAATTGCACTTCTGCCGGAGGTCATTAATGTGACAAGCAATCCACAAACTGCAGATTGTTCCGCATCGCCATCCACCAAAGTTGTCATCTTGTGTTCCATCGAAAACAGCACTGAAACCTACAAAGCCACGCTAAAACTCGGAACTGTTGAAATTGCACCAGCTAAAGAAGAGAACAATGGAATAATCAAATATACAGCAGAATTCACTGTTGATTGTATGGCAGACGGCAAACCAAGTTCACTTGAGGCCAGCTGCACTTTAGAGAACACTTTGAACCAGCTGCGAAATCGCACAATAAGAGTACCAATTATTTACCCCAGTGACCTGTTTTGTGCAGAGGACGAAGTTGAAGATAGAAAATGGCCTAAAACAAAGAATAATGAAACAGCCGTTATAGATTGCACTGCAGTAGGGAGACAGGGCTCAATGAAACGCAAATGCAACGGGAGAAAATGGGGGGATgaactctctctgtgtgtcaaAGCAGTCCTGAATAGTGTAGCTTTGCAAGCAAAGGATTTTGAAAAAGGACTTGGAGCAACACAAGAAGGTGCTCAGTTTATCTTTCAGAGCTTGAAAAATAACACATCTGAAGAGGGTGACAACACTTTTGGTGACGTCAAGACTgcagtttctgtttttgaaacTATGAACAAGGCATCAATAAACATGGCACTAGGCGAGAACCTTCTTCCAGATTTCATCGACTCAGCTAGCAGCATGTTGAACGTAACCTGGGAAGTGGGAGATGAGGAAGAGAGCAGCACACTGGCTTCACAATATCTGTCATCCGTAGAAGGCCTCGTGAAAAGCATCCGAATAAATGCTAGTGAGGGCTACAACTCCTCAAACATTCAGCTTCAGATCTGCCGAAGCGGCAACACTTGcaacaaaactgttttcaacgtGGACGTTGAGCTGAATGCCACAGCAGATATGGTGAAAACGGTAGGATTGCAGAGCTTGGCCAACCGCATGCCAAAACTGGGCTACGAGGATGCGACGTTTCCTAGCATAGTGGTATCCAGCACTGTTGAGAACAACACTCAGCCGTCGGTGAACATCAAACTGGCTTTTCCAAATGAAGGCGACAGCCAGGTCACGATGACCTGCGTGTTCTGGAACGTCACTGAGCAAAGATGGTCAGATGAGGGCTGCGAGGTCGTTAAAGGCTCCGGGAACGTCGCCACCTGTGAATGCAACCATCTCACCTCCTTCTCCATGCTCATGTCTAAGCATTCAGTAAGCATGCCTTTTCTAGATCAGCTCACGTACGTGGGACTGGGAGTCTCCATATGCTCTCTCATCGTCTACATCATCATCGAGTGTTTGGTCTGGAGCGCCGTAGTCAAATCCAACCTCTCCCACTTCCGTCACACAGCTCTCCTCAACATCTCTCTGTGTCTGCTTCTGGCAGACTGCAGCTTCTTAGCTTCCTCCTTCCCATCAATCCTAAATGAAACCTTGTGTCTTGTTCTGGTGGTGGCGAAGCATTACTTCTTCCTTGCCATGTTTTTTTGGATGCTGTGTCTGAGCGTCATGTTGGTCCACCAGCTCATTTTCGTCTTTAGCCACATTGGGAAAAAGGTGTACATGATCCTCGGATTCACCATCGGTTACGTTTGTCCGACAGTGACTGTTGCTGTTACGTACGTGTACTACGACCAAGCAAGCAACATCCCGTACTACAGCTCCAAAACGTGCTGGCTTACCTATCAATCAGCTCTGCAGGGATCCATCCACGCATTTCTCTTCCCAGTCGGGACCATCATTCTGGTGAACTTGTTTTCCATGGGGGTGGTCATCGCAAACGTCTTAAAGCCGTCTGGAGCTGAGAGCAACAAAAAGGGAGACAAAGAAGCTGTGAAAAGCATCATCAAAGTGGTTATCTTTCTTACACCAGTTTTTGGTGGGACTTGGGTTCTGGgactttttgtgtttctgatgGATGACTTTACACAGTTTATTACATATGTGGTGCATTACGCATTCACCATTGTCAACTCCTTGCAGGGCTTCTTCATCTTGTTGACAGGATGTTTTGCAGAAAAAAGGGTCCGGGATGAAATATTGAGAATAGTTCTTGGGAAATCAGGAAAAGAACAAGGAACAGTAACAACCACAAAATAACTGattcacacaaacacgcaaGTACATTGATCCGCCTGAGAAGCCacagcagcaacaaaaacagGAGAGGGAGCGCTGTTTGGTGAAGAACTAAAAGTACTTCTTGTACTTTAAAAGACTTAATACACATTTGGAACAAAGTATAGGCTGTGGTCATCCCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206343 lncRNA downstream 1133 18342047 ~ 18342330 (-) True G139704
TU206341 lncRNA downstream 2280 18340729 ~ 18341183 (-) True G139702
TU206340 lncRNA downstream 3219 18340029 ~ 18340244 (-) True G139701
TU206339 lncRNA downstream 3953 18339274 ~ 18339510 (-) True G139700
TU206311 lncRNA downstream 29858 18311356 ~ 18313605 (-) False G139681
TU206385 lncRNA upstream 55682 18405804 ~ 18411854 (-) True G139708
XR_006247142.1 lncRNA upstream 99822 18449944 ~ 18452122 (-) False LOC122324299
XR_006247141.1 lncRNA upstream 99823 18449945 ~ 18452116 (-) True LOC122324299
TU206392 lncRNA upstream 99840 18449962 ~ 18452132 (-) False LOC122324299
TU206496 lncRNA upstream 248572 18598694 ~ 18598912 (-) True G139790
XM_043219845.1 mRNA downstream 12411 18325927 ~ 18331052 (-) True pla2g7
XM_043219315.1 mRNA downstream 112408 18214570 ~ 18231055 (-) False fzd3a
XM_043219314.1 mRNA downstream 112408 18214570 ~ 18231055 (-) True fzd3a
XM_043220435.1 mRNA downstream 180138 18161260 ~ 18163325 (-) True lft1
XM_043220328.1 mRNA downstream 191790 18134188 ~ 18151673 (-) True kif26bb
XM_043218608.1 mRNA upstream 4048 18354170 ~ 18363861 (-) True LOC122324297
XM_043218603.1 mRNA upstream 16645 18366767 ~ 18401190 (-) True adgrf6
XM_043220535.1 mRNA upstream 51044 18401166 ~ 18405819 (-) True LOC122325497
XM_043220536.1 mRNA upstream 55681 18405803 ~ 18409109 (-) True LOC122325498
XM_043220537.1 mRNA upstream 59036 18409158 ~ 18416776 (-) True LOC122325499
XR_006247229.1 other downstream 519262 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 915392 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 915392 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1881247 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1976691 16364810 ~ 16366772 (-) False fndc1
TU206351 other upstream 55905 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 56632 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 725924 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 904688 19254810 ~ 19256255 (-) False batf3
TU206721 other upstream 911344 19261466 ~ 19262878 (-) True LOC122324949

Expression Profile