RNA id: XM_043220603.1


Basic Information

Item Value
RNA id XM_043220603.1
length 2242
RNA type mRNA
GC content 0.49
exon number 10
gene id znf395b
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18007946 ~ 18013527 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAAATCCGGAGTTACAGTATCTGAGAGGCTCGCAGTCAGGGGGTGTGTTGCCCTAAAAAAAGTAAAGGCACCGAGCAATATCCGACTGCGCTGCTTATCTATATGCAAAAATCCATCGCGTGCATTCGTTAAAGCTTTTTGTGCGGAGAGCCAAAGCCGACTGTTCAGCTGAGAGGGCACAGCATGGCTGCGGTGGGATCCAGAGCAGGACTAGACACGATATCGATGTGCACAGAAGGGCAGGACGGATTGGTCTACATGCAGTGTTGTGGCCAGGGAGAAGCGGTGGGTGTGCAGAAGAAGCTGAATGCAGGGACAGAGTGGTCGGCGAAGCAAACAAACCTATCCTTCCCACGGTCTTCCGGAGTGAATTTACCTTACAGAAGTCCTGAGTCGGTGGAGATGGATGAGATCATGGCTGCAATGGTGCTCACCAGTCTGTCCTGCAGTCCAGTGGTCCAAAGCCCCCCACAGAGGGACCTCCTACCAgGGGACATGGAGTGTTGTGGAGGTGAGCTGTCTGACAGCGGCAGCAGTGGTTACTGGAGCTGGGACCACGGCAATGTCAGCCCAGCCCCTTCTCCATCGGTCACCGAGATGGACAGGAGCCTCGGCCAACCGACAGACGAAGGACTGCACATGGAGCTGGACCAGGCTGCATGTGAGGAGCCGGAGGCCAGGAGGTGCAAGAGCTTGAGCAGGGGAGCATACAGGTGTCTGTGGCCTGGCTGCGGGAAAGTGCTGACATCACGGGTTGGAATGAAACGGCACATCCGTACTCTTCACCTGGGtgGGGGCTCAGAGCAGTCTCATAGGGAGGAAGACTTCTACTACACAGAGGTCTCCTCTGAAGATGAGGAAACTGCACCTCCATCTCCTGCTCCATCCTTCTCCAGCGGGGCCTGGACATCCTGCAGCTCCACACAAAGCCAATCCACCCCAGGACCCCAAGATGCTCCAGTCCAATCAAGCCCGCTCAGCCAATCAGCTCCAAGCAGCGTGTGGCAGATCCACACCGAACATCTCTATCAGgccTGCGCACCCATTCAGGTCACGGTCTCTCCAGGCTCTCCCACCTTTTGCAGCTGGACCCCGTCTGGTGACGTCCAGCAGAAACCTCAGATTCCAGCATCTCGCAGCCGGTCGGTGAGTGTTGGAGAACAGTGGCTACAGAGGAACAGCGCCCCCACCAGATCACAGACCATGAGTGCATCTCCCTCCAGAGGGCACTGTTCATTCAGGAAGGGTCGAGGTGAGGCCAAAAAGTGCCGAAAAGTGTATGGCGTGGAGCGTAGGGACCAATGGTGCACTGCTTGCCGCTGGAAGAAAGCCTGTCAGCGGTTCCcagattaaacaaaaaaaaaagactttagggGACAAGAAAGAATctccattttctttctttcctccagCTCTTTCCTGCACTGTAGAGGACCCGTCTTTTCACTTTtctacctttttttgttttcccagagttaaaagtgtttttgttatgttttccCACAAAGTGAACGCTGGTACTAGCTGTTGAGACTGTGGAGTAGTAGGATCCCAGCCCTTCAAAGGTGAATTCTGCCCTCTCACGAGACTAAAGTGTAATCCTGTATCTGATCAAGGTGTTTTTTCTACCCCAGTCCTGCACTTAATCCATACCCGAGATATTTAAGTGATTGTTGATTTTTGTATACTGTGGACAATGTATTGCTTTGAGCATTTTCATGATGTTTTTTCTATTGCCGTTTTGTTAGCCTGAAAGGTGTAACAGTGTGCTGTCatgtattgtctttttttttctacgtaTTTACTCTGAATTTAGTCACAACTTTTGAGTTTCGCGAGGTTTGACTTAGGTCGTATGCCATAGCGCTTCCTAATCAATCTAAACTGCCAGATATAAAGCTACAGTGGTGTTGAGTGAAAGTTGTGAATGATGCTGGCCACATTGGTGGCCATAGTATGTTGTCTGATGGAGATAAAAGTGCAGCTATAACCTTTTGATTGAATACCAAAGTGCTATTGCAAAGAGTTAAAGGGAGCTTGACTGAATACTGCCCGGTGAATAGATCGGGCTTGTTTCCTTTTGTACGTTTCTTGTCATCCTTCCAAAAGTGTTAAGGTCTTGTATAATACTGGAATCATCCCTTTGGGACCATCTAAAAGGATTTGAAAGCGTAACgtcatactgaaaaaaaaagttatgtatgATTAAAAGACACAagataaaatatgcaaatttcaAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247178.1 lncRNA downstream 100331 17893736 ~ 17907615 (-) True LOC122324448
TU206190 lncRNA downstream 109324 17894002 ~ 17898622 (-) False LOC122324448
TU206130 lncRNA downstream 205750 17801402 ~ 17802196 (-) False swt1
TU206137 lncRNA downstream 208080 17795484 ~ 17799866 (-) False G139567
TU206185 lncRNA upstream 74776 18087212 ~ 18107403 (-) True G139591
TU206184 lncRNA upstream 95108 18107544 ~ 18180187 (-) True G139590
TU206266 lncRNA upstream 144365 18156801 ~ 18157647 (-) True G139651
TU206271 lncRNA upstream 153690 18166126 ~ 18166731 (-) True G139653
TU206313 lncRNA upstream 243422 18255858 ~ 18290820 (-) False G139681
XM_043220232.1 mRNA downstream 12684 17989312 ~ 17995262 (-) True si:ch211-63o20.7
XM_043218850.1 mRNA downstream 32647 17967096 ~ 17975299 (-) True slc25a24
XM_043220059.1 mRNA downstream 146915 17843539 ~ 17861031 (-) True kifap3a
XM_043219503.1 mRNA downstream 183745 17806129 ~ 17824201 (-) False swt1
XM_043219851.1 mRNA upstream 2016 18014452 ~ 18017360 (-) True LOC122325023
XM_043219850.1 mRNA upstream 5783 18018219 ~ 18021576 (-) True paqr8
XM_043219852.1 mRNA upstream 18246 18030682 ~ 18036366 (-) True stmn4
XM_043218597.1 mRNA upstream 103678 18116114 ~ 18123136 (-) False sccpdhb
XM_043218596.1 mRNA upstream 103678 18116114 ~ 18123136 (-) True sccpdhb
XR_006247229.1 other downstream 183745 17810274 ~ 17824201 (-) False swt1
TU205714 other downstream 579875 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 579875 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1545730 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1641174 16364810 ~ 16366772 (-) False fndc1
XR_006247304.1 other upstream 331036 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 393591 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 394318 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1063610 19076046 ~ 19076118 (-) True trnaf-gaa_119
TU206720 other upstream 1242374 19254810 ~ 19256255 (-) False batf3

Expression Profile