RNA id: XM_043220625.1


Basic Information

Item Value
RNA id XM_043220625.1
length 5514
RNA type mRNA
GC content 0.56
exon number 34
gene id afdna
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22917664 ~ 23019738 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCGCGCGCACGGAGGCGCGATAAGACGAACCAGAGCCGGGAACGCGGAAACAGTACGAGCGCTCGACGACGGAGCCGAGGTGCGTTAACCGGCGACTGCGGGGAAAGAGCGACGCTCGCCACAGAAACCGCGTTCGAGAGCCCCGTTTCCGGGTGCGAcagattttacttttgtttcagGCCGTCGGACAAGAAGCCCGCTTGGGTGGATAAAAGCGAACCAGCGAGGGAAGAGACGGATTGTTTCGGGATTTGAGAATGTCGGGGAGCCGAGAGGAGGAGCGGCGGAAACTCGCCGACATCATCAACCACTGGAACGCCAACCGGCTCGACCTGTTCGAGATCAGCCAACCGACCGAGGACTTGGAGTTCCATGGCGTTATGCGCTTTTACTTCCAGGATCGAGTGGCGGGGAACTTCGCCACGAAGTGCATCCGAGTGTCCAGCACGGCGACCACGCAGGATGTGATCGAGACGCTGGCGGAAAAGTTCAGACCGGATATGAGGATGCTGTCTTCTCCCAAATACTCCCTCTATGAGGTCCACGTCAGTGGCGAAGAGAGGAAACTGGACTTGGACGAGAAACCACTGGTCGTACAGCTGAACTGGAACAAAGACGACAGAGAGGGCCGCTTCGTCCTCAAGAACGAGAACGACATCATTCCCAAGAGAACACTGTCAAATGGcccagagaaagagaaggaggggGTGATCCAGAACTTCAAAAGAACACTGTCcaaaaaggagaagaagaaagagaagaagagggaGAAGGAGGCCTTTTCCAGAATACCAGATGGAGATGATCACACACTGAACCGCGAGGATGGGGAGAACTCCAGATTGGCGGCTGAAGTATATAAAGACATGCCGGAGACCAGTTTCACGAGGACCATTTCAAACCCCGAGGTGGTGATGAAGAGGAGAAGACAGCAGAAGCTGGAGAAGAGAATGCAAGAGTTTCGCAGCGGAGACGGTCGACCAGACTCAGGAGGGACTCTGAGGATCTACGCCGATAGTCTGAAGCCAAACATTCCTTACAAGACCATCCTGCTCTCAACTACTGATATGGCTGACTTTGCTGTGGCCGAGGCTCTGGAGAAATATGGGCTGGAGAAGGAAAATCCCAGAGATTACTGCATCGCCCAGGTGATTCATGCAAATGATAAACCAGTGAAGGAGACCATACTAGACGACACAGATTGCCCTCTGCAAATCCTCAGAGACTGGACAAGCGataaagAGGCCTTAGTATTCCAGCTGAAAAAGCGCCCTCCGGACTACGTTTCAAGGAAAGGACGTAAACCTGACAACAGGATGCTGCCACACGGATCCATTCCTCCCGAGAAGCTACCCTACCTTGTTGAACTGAGCCCAGGGCGAGGGAGTCACTATGCCTACTACTACCGCCATCATGAAGATGGGTCAGACTCCCGGGATAAACCCAAACTTTACCGACTACAGCACAGCGTGACTGAGGTCGGATCTGACCGGAGTGAAGATGGTAACATCCAGCTGTTTGGGCCTGGGATTCTGCCTCACCACTGTGACCTGATGCATGCGGACGGGCTGGTGACCGTGACCCCTGTCAGTTTGGACGCCGAGACGTTCGTGGATGGACAGAGGATCTCCGACACTACGGTTCTGCGCAGCGGCGTGACGGTCCAGTTCGGAGCCACTCACGTCTTCAAATTCGTAGACCCCAGCTATGACCACAGCATGTCCAAAAGAGACCCAGGGCCCATGATGAAGGCCAGGCACAAATCGGGAAGTGTCCCGGAGACGACCTTTGACCTTCACGGAGACATCCACAGCGGCTCCGCTCTCCCTACCAGCAAGAGCTCAGGGAAGCTGGAGATGGAGCGCTCTGGAAACAGTGAAAGAGGCCTGGTGAAACCCATGATTAGAGGAGAACAGCAGGACTTTAACAAACATGACGGAAGGTCCCAGGATGGCCCAGAACTCACTCTGCCGGCCAGCATCGAGTTCAGGGAAAACTCCGAGGATGCCTTCCTGTCCGCCATCATTAACTACACCAACAGCTCAACAGTGCACTTCAAGCTGTCTCCCACCTATGTGCTGTACATGACCTGCCGCTACGTCATGTCCAGCCAGTACCGGCCCGACATCAGCCCCTCCGAGCGAACGCACAAGGTCATTGCCATTGTCAACAAGATGGTGAGCATGATGGAAGGAGTTATCCAGGAGATTGCTGAAGGTGATCAGAAACAGAAGAACATCGCCGGGGCTCTGGCCTTTTGGATGGCTAACGCTTCAGAGCTGCTGAACTTCATCAAGCAGGACAAGGATCTGAGTCGCATCACGCTAGATGCCCAGGATGTCCTCGCTCACCTGGTTCAGATGGCTTTTAAATACCTGGTGCACTGCCTGCAGTCGGATCTGAATAACTACATGCCGGCTTTCCTGGAAGATCCTGATGAACAGAACCCACAGAGGCCCAAAATAGAGGACGTTCTGCACACGCTAACGGGCGCCATGTCTCTTCTGCGGCGGTGCCGCGTCAATGCGGCCCTTACAATTCAGCTTTTTTCGCAACTCTTCCATTTTATCAACATGTGGCTCTTTAACAAGCTGGTGACGGAGGCCGACTCGGGCCTGTGCTCGCACTACTGGGGCGCCATCCTGCGACAGCAGCTCAGCCACATCGAGGCTTGGGCTGAGAAGCAGGGTTTGGAGCTGGCCGCAGACTGCCATCTCAGTCGCATAGTCCAGGCAACGACTCTTCTCACCATGGACAAATACTCCATGCAAGATGTGCAAAACATCAACAACACCTGTTTCAAGCTCAACTCTCTGCAACTCAACGCTCTGCTGAGCAACTACCACTGTGCTCCTGATGAACCCTACATTCCTCCTGAGCTAATTGATCACGTGGTGGCTGTGGCTGAGAACACGGCGGACGAACTGGCCCGAAGCGATGGGCGGGAAGTACAGCTCGAAGAGGACCCTGACCTCCAGCTGCCTTTCTTACTGCCCGAGGATGGCTACTCATGCGACGTGGTGCGGAACATTCCCAATGGATTCCAAGAGTTCCTAGAGCCGCTTTGCCAGAGAGGTTTCTGTCGATTGACACCTCATCCACGCTCTCCGGGAACTTGGACCATCTATTTTGAAGGAGCTGATTGCGACAGTCACTTCTCAGCTGACACGTCAGAACTGCCAATGCGGAAGGAACCGGAAATTGTGACAGTAACTTTGAAGAAACACAATGGGATGGGTCTCAGTATTGTGGCGGCCAAGGGTGCCGGACAGGACAAACTTGGTATTTACATCAAGTCTGTTGTCAAAGGAGGTGCAGCAGACATGgaTGGACGTCTGGCTGCCGGAGACCAGTTGCTCAGCGTGGATGGAAGAAGTTTGGTTGGCCTCTCGCAGGAGAGGGCGGCAGAATTGATGACACGAACTGGCTCTGTTGTGACACTCGAGGTGGCCAAACAGGGAGCCATTTACCACGGTCTGGCCACGCTCCTCAACCAGCCGTCCCCTATGATGACCCGTGCATCTGACCGTGGGCGTGTAGACAAGGGAAAGATGAGACCAAAGAGCGAGGGCTTTGAGCTCTACAACAACTCTGTGCAGAACGGCTCGCCTGAGAGCCCCCAGGGCACGTGGGACACCTATCCTGAACCAAAGAAGGAGGACAGGTTGTTGAAGAACCGTGCAGACCACCGCTCAAGCCCAAATGTGGCCAACCAGGCCCAGAGTCCTGGCGGGAAGCCTGTTTACCCAGGAGCCCCTGGAAAGATCACTTCGGTCTCGACGGGTAACCTCTGCCCTGATGAGGAGCCCTCTCCACCCCGTCCAGAGGCGTATCCTATCCCCACTCAGACGTACCCAAGGGAATACTTCACCTTCCCAGCCTCCAAATCTCAGGATAGGATGGGCCCTGGCCAGCCGTGGCAAAACAATGAACAAGAGCCTCTCCCTCCTATGGATAACCACTCTAACAACAGCATGGCTATGCAGCGTGTGGCGCGCTCTCAGGAGGAGCTGTGTGAGATGCCGGGTGGGTACCCAGGTGAACGCCTGCGTCAGGAAGACCTGATGcacctgcagcagcagcagcgtgaCGCAGAGTACCGGGGCGGTGGGGAGCACTGGAACCACCAGATATCCTCCTCAGTGGAGTCCAGCACCTCCAGCCAGGAGCACCTCAACTACTCATCGTCTTCCGGCTCCAGGATCCAAGGCAACCACAAGAGTGGCCCTGGGCGCTGGAAGACCCCTATAGTACCGCACTCCGGCCCCGTGAGCGTCTCCCAGCCTTCACGTTCAGATCTTCCacctccccctcctcctcctcctgcgcACTACGACTACGAGCCACAAACCGACCTGCCGCTTCCTCCACCGCCCTCTATTACGCAGCAGGCAGCGGCCGCCGCAGCCACGGCTGACCGCAAAAAACGCGAGGAGCAACAGCGCTGGTACGAGAAGGAAAAAGCCAGGCTCGAAGAGGAgcgagagaggaagagaagagaccaggagaggAAGCTGGTGCAGATACGCAACCCTCCCGGCCCAGTCATGCACAACAACCAGCACGGCCCATTGCCGCCCGCCCCTCAGCACCAACAGATGCCCCATCCACAGCCGCCCATGCAGGTACCCCAACCGTACCTACCCCCGGTCCAGCAGCCCCAACCGCCACAGCCACAACCGGCTCGACCCGACAAACTATCCAGCCTTCCCCGCCAGCCGCCACAGGACACGGTAATCCGTGACCTCTTGCCCCAGCAGCAGCCTCGCACCATCGAAAGACGTGACCTGCAATACATCACCATCAGCAAAGAGGAGCTGTCCGCCAGCGACAGCCTCTCACCCGACCCCTGGAAGAGGGACGCCCGAGAGAAACTggagaagcagcagcagcttcaCATCGTGGACCTCCTAGACAAGGAGATCCAGGAGCTTCAGGCCAAGCCTGAACGCACGGCCGAGGAGAACGACCGTCTGCGCAAACTCATGCTGGAGTGGCAGTTCCAGAAGAGACTGCAGGAGTCCAAGCAGAacgaggaggatgaggaggaggaggatgacgAAGACGTAGACACCACGCTAATTATGCAGAGGCTGGAGGCTGAGAAGAGAGCACGGCAGACTGCTGTTCCAGCAATCTCTGTACTAGACTTGCTGCAGGACGAGGAGCGACGACGGAAACAGCAGTTGGAGGAAATCCGTAAGCGTGAGGCAGAAGAGCGAGCCAAACAGGAGGAGGAGAGACgctggagagaggaggagagagccAGACGAGAGGCCGAGGAGAAGgATTTAATTCATACACTGGAAACACAACAGGACTAGGATCAGGAGAGATTTACAAGGACCCGCGAGAGAAGTGGACAAAAGGCAGCCCCGACCAGGAGAACACAATAGGAGGAGCTCCAGAAAACCTGACGTTTAAGGAGCGCCAGAGACTCTTCTCGCAGGGAAAGGAAGTGTCAAATAAAGTCAAAGCGTCCCGGAAGCTCATGGAACTGGAGAACGAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208617 lncRNA downstream 3178 22909257 ~ 22915952 (-) True G141331
TU208609 lncRNA downstream 25115 22888520 ~ 22894015 (-) True G141324
TU208599 lncRNA downstream 28997 22878732 ~ 22890133 (-) True G141319
TU208601 lncRNA downstream 28997 22884062 ~ 22890133 (-) False G141319
TU208585 lncRNA downstream 87709 22830914 ~ 22831421 (-) True G141307
TU208641 lncRNA upstream 35310 23055048 ~ 23056056 (-) True G141343
TU208678 lncRNA upstream 175435 23195173 ~ 23196196 (-) True G141370
TU208717 lncRNA upstream 551258 23570996 ~ 23571790 (-) True G141404
TU208815 lncRNA upstream 751339 23771077 ~ 23771457 (-) True G141477
TU208816 lncRNA upstream 751779 23771517 ~ 23772116 (-) True G141478
XM_043219252.1 mRNA downstream 41985 22859476 ~ 22877145 (-) False snx9b
XM_043219248.1 mRNA downstream 41985 22859476 ~ 22877145 (-) True snx9b
XM_043219251.1 mRNA downstream 41986 22859476 ~ 22877144 (-) False snx9b
XM_043219250.1 mRNA downstream 41986 22859476 ~ 22877144 (-) False snx9b
XM_043219249.1 mRNA downstream 41986 22859476 ~ 22877144 (-) False snx9b
XM_043219200.1 mRNA upstream 23362 23043100 ~ 23054740 (-) False si:ch211-140l13.3
XM_043219199.1 mRNA upstream 23362 23043100 ~ 23054731 (-) True si:ch211-140l13.3
XM_043219201.1 mRNA upstream 23362 23043100 ~ 23054730 (-) False si:ch211-140l13.3
XM_043219204.1 mRNA upstream 42535 23062273 ~ 23067373 (-) True slc22a2
XM_043219205.1 mRNA upstream 42535 23062273 ~ 23067366 (-) False slc22a2
unassigned_transcript_2512 other downstream 803341 22115707 ~ 22115789 (-) True trnal-uaa_37
unassigned_transcript_2511 other downstream 804010 22115038 ~ 22115120 (-) True trnal-uaa_36
TU208103 other downstream 806086 22112602 ~ 22113044 (-) True G140972
TU207994 other downstream 1072213 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 1077662 21841113 ~ 21841468 (-) True G140883
XR_006247154.1 other upstream 369431 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 370727 23390465 ~ 23401391 (-) False mcm9
XR_006247156.1 other upstream 370729 23390467 ~ 23401391 (-) False mcm9
XR_006247216.1 other upstream 772339 23792077 ~ 23823050 (-) False tbc1d32
TU208856 other upstream 984949 24004687 ~ 24006665 (-) True G141502

Expression Profile