RNA id: XR_006247149.1


Basic Information

Item Value
RNA id XR_006247149.1
length 2049
lncRNA type inter_gene
GC content 0.38
exon number 9
gene id LOC122324332
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11623593 ~ 11631094 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCGATTCGCTGAAACGAACAGGGGGCGGTCCTTCTCCTTTGAATATCCCAGAATCCCTCGCACCGGTCACACGTGTTCATTGCTCTTCGCTGCAGAGATCACGCGGTCGTGTGCTGGAGGCATCATGAACGGACGCAGCATGGGCGTCGgTCATCCATATAAACCCCCTTGACTAAAGAAACGTTACACTTTCTATGCTGTATTTCCTGTAAAGGTTATCCATCTAAACCCACTGTCTGAAGGAACGTTACAATTTCTGTATTATCTATAAAGgCTCACATATTTGACCTCGAGGCATCCGTTCTAAAGAATCAGTTACCTGGTTGTCCATCTAAACCCCCTGACCGAGGAAATGTTACAATTTCTATGTATTACCTATAAAGGCTAATATTGTTTTGGCCTCGAggcaatttttttctttctgaagaaTTCTTCAACGGTTACCTGcttcTGAGGTTGACAGTCAGAACTGACCCTTATTGGAACTGGAGCCATTGCTAAAATAGACGTAGCATCTGCATTACCAGGACTTCTGCATTACAACACACGATGAGATATTAACATTATCTAACTAACACAAACAACTCTAGAGCTGCATAGCACAACTGCTTGCGTTTACCACACATGGAAAGTTTCTTTGTTAAACAACAGAGCTCTGATCCATGGCCATATAGGTCAGTTTCTTCTGTGCAGTACCCTTGTTTTAAAGCATTCTACTAGCTAGTGCTGAAAATTGGTACGAAACAAAACTACATTTGGTGAGCATTTCAAAATAGTACTGGAAGGTTTAAcacaatgtattataaatatgaatagttttatttgtaagCTTACAATGTAGACTCATGCATGCATTACTTTTacatttggaattttttttttttttgacctgtAAAATTCCAACCACAGTACAATTTCCAGTAAAAAAGATACTCTGCtgctttcagaaaacaagagGTTTTCTAGAGGGTGGTATGACTGACGACACTACAGAAGATGATATTAAGACAGAATGGGCTGATGTCTGCATAACTGAATGACATGCAGACCAAGTACAAAGTTTGCAAGATGGCCTACAGATGAAGAATCTGACAAACAATGGATATGTTTGTAATGATGCAACAAAATTCACACTCTTCATAGCAATTAGGCAATTATTTTTCAATGCTAATAGACTTTGTGCTTGTTTATTCTGTCTATGCCAACAATTTAAACTCCTTACGGTTCATTAATCTGATCCTTTtttatgtatactgtatgaatgaatttatgttatttatgtatttatgacTGAATAGCCATTTATAGTTTTGTTGTGGAAGTCTAGATCAATGATTGATATTAAATTTGGACCCCCAAATGTAAATCTCAtgggaaatatgaaataaaatgctaacaCGGGTTGGGCTGTGCTATGACAGCTAATTAGGTTCAGATCATCTTGATGTAGTCGCTAAGGAAATATTCAATGTGTTTACTGAAATGAAGACATAAAAGGTGGTAGAGGCAAAGTAGTTCAAGTATGcaataacaaatcaaaacatcaaaaccTTGCAAAGGGAGGTGTGAAAAATGAGGAGGGGTGATGCATGTCAAATCCAGCGAAgctgtgaggtgtgtgtgtgtttcaaccAGAAGACAAAGTGTTCCCAAAGATCCATCTGCAATCCATCTGAACGTGCCCTGCTGTGTCttaatttataaacacacagaatATTTGTGTATGCATGAGTTCATGACCGCTGTGACACCTCTCAAGCATAAAACGAATGGCAGAGAAAGTTAAAGAGAGTGTCCTAGTTCAGGTGTACAGTTTTAGAAACAGTGGTATTCTATTCTGTTCACGCATGGGCCTGTAGATCGACAGaatatatgtgtacattttttgaGTTATTGAGAAACTGTATTACGTATTACATGCTAAAGCAGACATGCTTTTCTGTAACCCGGAAAATGTCACATTGCATAGTTTTAAGAATGTcgtttcatgttgtttttaagtgcTTGGATAAATTATGTTCAATAAAAGGAAGAGAAAATAGGATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203440 lncRNA downstream 9971 11612023 ~ 11613622 (-) True G137751
TU203293 lncRNA downstream 396228 11215226 ~ 11227365 (-) True G137644
TU203252 lncRNA downstream 428746 11191659 ~ 11194847 (-) True G137621
XR_006247254.1 lncRNA downstream 508668 11113796 ~ 11114925 (-) True LOC122325111
TU203241 lncRNA downstream 508760 11113891 ~ 11114833 (-) False LOC122325111
TU203474 lncRNA upstream 86144 11717238 ~ 11751172 (-) True G137779
TU203475 lncRNA upstream 86144 11717238 ~ 11726234 (-) False G137779
TU203514 lncRNA upstream 140175 11771269 ~ 11771660 (-) True G137812
TU203482 lncRNA upstream 161456 11792550 ~ 11797951 (-) True G137784
TU203524 lncRNA upstream 205012 11836106 ~ 11836716 (-) True G137821
XM_043220584.1 mRNA downstream 15840 11604630 ~ 11607753 (-) True rasl11b
XM_043220158.1 mRNA downstream 117266 11484137 ~ 11506327 (-) True fip1l1a
XM_043220026.1 mRNA downstream 255103 11366923 ~ 11368490 (-) True gsx2
XM_043220053.1 mRNA downstream 263554 11339863 ~ 11360039 (-) True pdgfra
XM_043220208.1 mRNA downstream 303674 11301144 ~ 11319919 (-) True kita
XM_043218909.1 mRNA upstream 38046 11669140 ~ 11676648 (-) True spata18
XM_043218910.1 mRNA upstream 39094 11670188 ~ 11676651 (-) False spata18
XM_043218819.1 mRNA upstream 61688 11692782 ~ 11704023 (-) False dcun1d4
XM_043218818.1 mRNA upstream 61688 11692782 ~ 11703984 (-) False dcun1d4
XM_043218820.1 mRNA upstream 61688 11692782 ~ 11703938 (-) False dcun1d4
XR_006247255.1 other downstream 255103 11366923 ~ 11368490 (-) False gsx2
TU203250 other downstream 441424 11175194 ~ 11182169 (-) False LOC122325476
TU203246 other downstream 487005 11132626 ~ 11136588 (-) False LOC122324412
unassigned_transcript_2506 other downstream 690949 10932562 ~ 10932644 (-) True trnal-cag_34
TU203048 other downstream 899524 10721921 ~ 10724069 (-) True G137469
TU203468 other upstream 51311 11682405 ~ 11683318 (-) True G137773
TU203734 other upstream 587669 12218763 ~ 12219639 (-) True G137967
TU203715 other upstream 591716 12222810 ~ 12224270 (-) True G137949
TU203701 other upstream 615128 12246222 ~ 12247010 (-) False mdn1
XR_006247291.1 other upstream 1794381 13425475 ~ 13436351 (-) False cracd

Expression Profile