RNA id: XR_006247199.1


Basic Information

Item Value
RNA id XR_006247199.1
length 2644
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC122324574
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17555855 ~ 17559470 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGAACTCCACTCTGCGGCGCTGCTGCTGGCTCGGGGCCCAGCTCAGGGGGAGGCAGGAGGAGGGGTTTCAACGACGACAACGATCAGATAAGACACAGCGCAGGCAGATGACTTCAGcacatTGTGGTGGCTCAAAGACTCCTCGCGATTCCCCCCAGACTGTTTCTCAGAGTGTGGGGTCATACAAGGGTGAGCTCTCACTACCTCCGAAGGTTATTCAGAAGTCACCAGCATTCACCAGTCTTGAACTAGTGTGGGGTTAGTGCTCAAGATGACCAGTGACTTCACAAGGCCCCTCCCTGTAGGTTTGAGGATAAGCCCACCCCATCCCACAACCCCCACATACTCTGTCCCCTCATTGTAAATGACCTATTAAAGAACACAACACCACGGTAAACAAGATGAATGGCTTTTTTTCCAACCCATCTCACACCAATCAAGGCTTTCTGTTTAAACCCCCTTTCTTAAGTCTATTAGatcatgttaatttattaaagtCAAACTGAAGAATTAAAATGGTCATTTGTCACTGCTGTCTTTGTGTGGGCTTAATGGTGGCACATGGTGTAAGGCCTGCAATTTGTTATCCTctcctttttgttcttttttaagccttttttttGGGTTAAACATGAAAAGAAATCAAGCTGCACTCAGTTTCTTGTGGCATAACTGTCTGCTaatcatacattttatacatttttatactttgcTCAGTCGTTTCGGTGTTATTGACGGTACACCCAAGTACACCAAAAATTCTATTTGTGTCGTCCTTGTTCCAAAtctatattaatttctttttttatgcacacaaaacaaaatataatggaTGGTCAGTGGCAATATGGGTAAATGGGAATATAAACGGTTTGcttaccaacattctttaaaacatcttctttCAGGTttgacagaagaaagtaagCCATAcaggtttattcatttaattgctGGGtagactatccctttaatttaatttgttgttattttttctgCCTCTTTCAACCTCCATCATGTTTCTTTTGCCACCTTATCTCTAAGATAATCAGCCACACACTCTTTCTTACACActaacaaacacactcacagtcaGAGCTGTCAGTGAGCCAAACCGTATGCAGTAATCCCTTTGTATTCACAAACCCATCCAGACAAACAATGTGTCCCAGCCTCGTCCCACCCCCAGCACACCAGACCTAGGCCACCTGCTAACTCTACAtcatccacacaaacacaaaccaaagGATGAAGACCAGCAAGTTTGTGTCAGTGTGTGATTTACTGTAACATATCTCTCTGACACGTGTGCATGTTATGAATGGTCTTTCTATTAGGAAACTGGTAACCCGTGTGCAAATACTCTCCTTCCAGTCTGTTCTTCTTCTCTCCACTCCGCTCATACGTTCTCCAAATCCTCCACAAATCCCCCTCACACAAGCTGAGATGATAAGTGATCCTCTTCTGTTGTCGCTCGGAGGAGACAATGCTCAACAACTGTGTTCAACATCATCAATCTCAGAGGACATCcatcacacaaacaaaagatGAAACCTCTGCTTTCTCTCGAGTGAAAACACCCACAGAGATGCAAGTGCAGAACAGAAACTGAGGGGTGGGAGTGATTTTATGGAATTTTGATGACAGGAATCCTTCAGCATCCTTCATCCTACATCGCTCTTCATATGTTTTCCAGCAGGAAGTTCTAAAATGTTgcaatatgctttacttttattGCATAACTCTCTGCTCGTTTTCTGAAATCTCTCACACTAACGTTAAGTTGGGTTAAGTTGGGTGCAGAAAGCCTGATTTTGAACAAACATGTTCCCGTGGTGACAAAAAGACATGGTGGTCGATGCTCTAATCCGTTCCGAATGGATGTTCTTGACGTGAATGTTACATTAACCTGTTAATCCTCAGACTGTTTGTGGGAGGGGGCTGCTGGGTTTACACACAATTAACCTGAATAGACCATACTGCCTTATGATTGGACGAAAGCCTCAAAACCCTCTTACTCGAATGAGTTCATGTCATTGGAAGCTTTTACCTTAAAACACtctaaaatgaatgacttttatATTGCTTAACATGGCTGTTTTTGCCATAAAAACCTAACCTATGTTCACATAAACCGATGAGTACAAGCAAAaagataatattattttaatctgacGCTCAATCTATGaaggttttgtttcatttttagtaagcaactgctttattttaaataaataaataaatgtaggttTAGGCTTTTGAAAACACAAGAACAGGCCATGGGTAAAGTGTGTAAAAGGGTCAGATCCAGCCGAGATTGTTGTAGACCACCTCAGGTTAAGCTGACAATGTCCTGGGAAGACCAACAGGATTATAGCTATGAACACCTGTTACAGATCTTCAAACCAGCTAGTGTGACCTGATGCTTGACATTTAGAAACTTAACAAGGAAGATGAAGAGCCAATGAATATGCAACCTGTTCTACCTGTTCAGATAGTTGGCTTTGcaaaacagttttattattcctagaattttttatttcatgcgtTGTGCAGTTTCTATTGTCAGTTTGACGTTGGCTAACTTCTGTGCCtgttaattgttttattgtgtttggcTGTCACTCAAAAAGCAATTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247186.1 lncRNA downstream 146360 17396342 ~ 17409495 (-) False LOC122324490
XR_006247185.1 lncRNA downstream 146360 17397428 ~ 17409495 (-) True LOC122324490
TU205717 lncRNA downstream 159857 17394864 ~ 17395998 (-) True G139323
TU205702 lncRNA downstream 219535 17336007 ~ 17336320 (-) True G139317
TU205687 lncRNA downstream 429945 17125437 ~ 17125910 (-) True G139302
TU205818 lncRNA upstream 55678 17615148 ~ 17615699 (-) True G139386
TU205819 lncRNA upstream 56323 17615793 ~ 17616508 (-) True G139387
TU206133 lncRNA upstream 229728 17789198 ~ 17794072 (-) True G139565
TU206135 lncRNA upstream 236014 17795484 ~ 17799866 (-) False G139567
TU206136 lncRNA upstream 236014 17795484 ~ 17799866 (-) False G139567
XM_043219300.1 mRNA downstream 908 17523618 ~ 17554947 (-) False atf6
XM_043219299.1 mRNA downstream 908 17523618 ~ 17554947 (-) True atf6
XM_043219652.1 mRNA downstream 40375 17499479 ~ 17515480 (-) False fam102bb
XM_043219651.1 mRNA downstream 40384 17499479 ~ 17515471 (-) True fam102bb
XM_043220564.1 mRNA downstream 74321 17455737 ~ 17481534 (-) True rock2b
XM_043219098.1 mRNA upstream 26914 17586384 ~ 17595986 (-) True LOC122324570
XM_043219099.1 mRNA upstream 30227 17589697 ~ 17595986 (-) False LOC122324570
XM_043219105.1 mRNA upstream 37923 17597393 ~ 17602425 (-) True LOC122324572
XM_043219097.1 mRNA upstream 44188 17603658 ~ 17608945 (-) True LOC122324568
XM_043219095.1 mRNA upstream 44188 17603658 ~ 17608945 (-) False LOC122324568
TU205714 other downstream 127784 17346806 ~ 17428071 (-) True erh
TU205713 other downstream 127784 17425868 ~ 17428071 (-) False erh
TU205287 other downstream 1093639 16455468 ~ 16462216 (-) True G139030
TU205233 other downstream 1189083 16364810 ~ 16366772 (-) False fndc1
TU205232 other downstream 1190388 16364810 ~ 16365467 (-) False fndc1
XR_006247229.1 other upstream 250804 17810274 ~ 17824201 (-) False swt1
XR_006247304.1 other upstream 784002 18343472 ~ 18350122 (-) True adgrf3b
TU206351 other upstream 846557 18406027 ~ 18446949 (-) False G139706
TU206365 other upstream 847284 18406754 ~ 18442292 (-) True G139706
unassigned_transcript_2507 other upstream 1516576 19076046 ~ 19076118 (-) True trnaf-gaa_119

Expression Profile