RNA id: XR_006247256.1


Basic Information

Item Value
RNA id XR_006247256.1
length 3300
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC122325129
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22061572 ~ 22067308 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATAAACCATATCTTCAGTCATAAAGATTTGCTGTGTCCTTGATTTCTTTCTGCTTGCTGCCACCGCTCTTCCTGTTTCCCGTGTGAGCCATTGAGAGaaaaagtgTTTGATCTTCAACACATCGGCCCTAAAAGTCCTATCCTGCAGAGTACCGGTTTAAAAAGATCCCCGTTTTGTGAATCACCAAATCTGGATGGATTTTCAATTCTGCAAAAAATCCAGCAGATGGGCTGCCATGCATAATGCCATCGTCAATCAAAGACAGAGACGCTGCCAGTGTGAGCAAGTTTTTTAATGTAGATCAGATGCCATTATAATGGATCTGACATCATTCAGAGGCCATTTGCACTTCAGGGCTGCATGCGGTCTGCTTCATTTGCACATCAGACACTAGATGTTGATGACAAGCTTTTATTTGTGACCTTcacatttcaattattttgagTGGGGCAAACAGAGGAGgctttaaaatatgcatgcaaacaaacaaatgcaactgGAGGTCCGCACATACACAGAATAAGAGAAACAAACCGCGTTCACTTTGTTCATCCCGTGCACTTTTTTTGTCGTAGGTCACGCACACAAAGAATAATCACAACATAAAAAGGTATCGAAAGCACAAAATGAGATGTCTGATTAAATACAGTTCACGTTTATTTGCATGAACAAGTGCTGTGATTCACTCTGAATGCTCCCATTGGCATTTTAAGACTAACTGATGTAGACTGTTCACTGAATTAGAATTAGACTGGTATTCATGTAATTGAATAACAAGGACAAGCCAGAGGGCTCGTTTCAATCTTAATTTTGTTCAACGGCCAACtttatcaactttttttttcccgggTCATTGCAGttatatagcactttttgtAACTTTgcagaaataatacaaatagtaATTTATGGCCAATATTATAAAAGGGTATAACACTTATAGAAATTTGGGacaggctatatatatatacatatagtttatctataaattaatttgttcatgaatgaacaaatgactCATGATCCGAAGTCCTGTTCTGAATCAAGTGATTCACTCTCCAAAGTTCTGATTTGAACATTGCTTTATGATCCTATCTGAAACAAATGATTTGTGAACCTGTTCCAATCTAAATCATATGATTCACAATAAACTCTCCGAAGGCCCGATCTGAATGAAATGATTTGTGATATGAGCACTGAAGTTCCAGTCTGATCCAAAAGATTCACAAATCCACTCTGAAGCTCCGATCTAAATCAGATGATCGATATGCGATTTGAAGACGAATGGTTTAACTGATTCAGACTTTATAAGCGATGTCTAAACTCAAAAATGAATAGCCCTTTTGTTCTGGTTTTTATTTGTGAGTTTGAGCTTGAATCAATCAGATGAGTCCCAGCGTAAATGACTCACTCAGTTCAATcgctttgtctttttttcagctAACTGAAAAGCGAAAAAAGTCTAATGTGCACAGATAAAATGTCCATATTTTAAATTCTTCCTCCAACacaaatttacaaatgtattcatttgagATAACCAGTTCACTGCTAACTAGAGAAGCACtccattaaaatgacaaaatgcacctcaaaacacattttagatgGAAACTAGATGATCAAGTTTGTAGCTTAAAGTCTGCATGAACTGGACGTTTGTGACTGATTTTAATTCTGTATTGTGACATAGATATGTCCAAGGATATAGCCTAACAGCTGCTCGGATTCACACTATAGATCTTCAGTACCCTTACAGGACAAAGGCTTCGACTTTCTGACCTCCATGTGGAAGAAAGCTTCCAAAACCAACCGCTGGAAGTGAAAAGGATTCAAAGTGACCTTAGGAACGTAGTCAGGCCTTGGTCGCAGCAACCCTTTCCCTAATCCTGGTGCAAAATCCACGCACAAAGGTGAGATAGAAAGAGCTTGTAAATCCTCAACTCTGTTGAGGGAGGAAAACGCTATTAACAGAATCGTTTTCAGTGTCAGGATCTTCTAAACTTAAAAGGTATGACGCTCGCCTGATGAAAGTGATCAATCACATTACTGTGGTCAGTCTGCATTCTTATCCTTTTTTTTCTACCAGAGACGACGTGAAAAGAGCCACAGGGCAGCATTGGGTCAACTTCCTTAACATTCATCTTCGAAAGGCCTTTCTCCACAAGTCCAGGACTGAAAGCTGAGGTGTGAGATGTACTTCTCTCTTCATTTAGTTTCACCGCAGGTCGTGCTGGAACACCAGGCCAATGTTTACACCTCCTCAGATCATATTATCCAAATGGGAGATCATGCCTGTAGCCTCGAGACACGAGGGATCGGTCTGGTGCACCGTGTTCAAATGTCAGATCCCAGTTAAACACCTCTGCCACCGCGAGTTCTCATCTGGATCAGGACTGGAGAGGTGATCGCTGACGTCTGATCGATTTCAGATAGGGCACCGGGGCTGCGATCGGCTGACAAGCGTGAGCTCGGAGGGTAATTGATGAATTAAAGGAGATCGGCGGGTCATCTTTGATGTGGAAACTTTTGGAAAGATTGGATTGTGTTACTTAATTGGCTCATATTGTCTTGCAAGGCAGACGATGCTTATCAGCATCTCTCACATTTCATCACCCTCTCCCTCGAGTCCTGAATCCATCAGATTATCTAAAACAAGGGAGGATGAGATTATGACTGTAAAATAGAGTTATTCTCACATGGTTGTGCAGAAGCTGTTTGCTGCCGCATGTTTAGCGGATTTCAAGTGTGATCAAATGCACtggtttatttcagtaaaataaaaaccagttaaagcatttttattagaaaaaaatgacaaaactgagCAACTAATTCACAATATTTAATAGAATGTTCTCCGTAAAAAAGTTATTCGCATATTAATGTGCTGATTATATAGACGAGCATTGACTCAAAATATAGAAAATCGACTGAAAGAAGAaatttagcaaatatatttagcattttattgtaCACAGTAGTTTATTGCACGCATTAGGGTGATAAATTGCCTTGTCAGTGTGTTCGTAATATGCCGTATATCTGctgtgaataataatataagtacctgaaaataaatgtcaaggattcaatatttaatgatgGATAGGCACTTAGTCAtatctgctgaaaatgtaaaactgtaggATTCTGACCTATCAAGACTTTTGGAAGCTTACTGGGTATgtgcaatataatttttaatctatcatacgtatatatacacaaacataaacaatacatttattacagtatttattcatctttgtcaATAttctttcataaaaatattctt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism
ko04146 Peroxisome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208063 lncRNA downstream 20460 22039565 ~ 22041112 (-) True G140940
TU208018 lncRNA downstream 91423 21967344 ~ 21970149 (-) True LOC122325423
TU208017 lncRNA downstream 91569 21967344 ~ 21970003 (-) False LOC122325423
TU208092 lncRNA upstream 14216 22081524 ~ 22082617 (-) True G140964
TU208095 lncRNA upstream 30598 22097906 ~ 22098339 (-) True G140967
TU208100 lncRNA upstream 38661 22105969 ~ 22106281 (-) True G140969
TU208101 lncRNA upstream 43355 22110663 ~ 22110869 (-) True G140970
TU208102 lncRNA upstream 44852 22112160 ~ 22112425 (-) True G140971
XM_043220027.1 mRNA downstream 2746 22053057 ~ 22058826 (-) True chgb
XM_043218684.1 mRNA downstream 55324 22001213 ~ 22006248 (-) True bmp2b
XM_043220548.1 mRNA downstream 125113 21935374 ~ 21936459 (-) True LOC122325511
XM_043220547.1 mRNA downstream 142768 21917818 ~ 21918804 (-) True taar11
XM_043220496.1 mRNA downstream 174049 21886498 ~ 21887523 (-) True LOC122325446
XM_043219962.1 mRNA upstream 24764 22092072 ~ 22097205 (-) True gzf1
XM_043219319.1 mRNA upstream 327527 22394835 ~ 22470270 (-) False atad2b
XM_043219318.1 mRNA upstream 327527 22394835 ~ 22470270 (-) True atad2b
XM_043219320.1 mRNA upstream 336704 22404012 ~ 22470270 (-) False atad2b
XM_043219741.1 mRNA upstream 431437 22498745 ~ 22505802 (-) False LOC122324950
TU207994 other downstream 214655 21845806 ~ 21846917 (-) False LOC122325102
TU207987 other downstream 220104 21841113 ~ 21841468 (-) True G140883
TU207950 other downstream 320568 21732546 ~ 21741004 (-) False batf
TU207887 other downstream 549219 21509629 ~ 21512353 (-) False LOC122324936
TU207613 other downstream 782831 21198710 ~ 21278741 (-) True G140616
TU208103 other upstream 45294 22112602 ~ 22113044 (-) True G140972
unassigned_transcript_2511 other upstream 47730 22115038 ~ 22115120 (-) True trnal-uaa_36
unassigned_transcript_2512 other upstream 48399 22115707 ~ 22115789 (-) True trnal-uaa_37
XR_006247154.1 other upstream 1321861 23389169 ~ 23401391 (-) False mcm9
XR_006247155.1 other upstream 1323157 23390465 ~ 23401391 (-) False mcm9

Expression Profile