RNA id: XR_006247259.1


Basic Information

Item Value
RNA id XR_006247259.1
length 1297
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC122325152
representative False

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 10934946 ~ 10937374 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGGCCGGGAGCATGTGGCCATGCCTGGGCAGAATCCACCAGTCAAGCAGAGAGGACGATACACTTAGCACTCAGCAGAAGAGGAAAGATGGGAACGCAAAGACGGAGATGCTGGGTGACATCTCTGTTTTACGAGGGGAGCAAATGGAAGATTTTACACCTCTGCCATCGGAAATGGCGCTGTTAAAGGAAGTGGAGAATGAGAACGCTTCGGGTCTGTTTATATGTGAGAAGGTGTTCGAGTGCTAGTCCTCTCCTGCTTGGCTGGCTAACCTCCATGTTCCTTGTCTGTGGACACttgtcaaaacaaaaatgatgatgaaaaaggAAGAGATAACGACATACAgGTAAGCAGCGAGAGTGATTTGCCAAACTCGTGAACATAAGCTCCTGCCGTTCTCTCTGTCTGAAGCAGCACGCCTTGCTGTGGCTGGTCAAATGGAACCAAGTCAGGTGTTTCTGCGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAATACAGCCAACATAGAGCACAGATTATAAGACAATCATTCagtctgcttttttaaaatgtactaaccctatttttttcattatggtttttgtttcttctaaaattcaataaagttttttcctttttcatgtTGGATTAATTTTCTCCTTCTTAATTctgatattaattaattattctttCTATATTAATCTTTCGGTCCCCGAGCTCTTCATTCGTTGCCTTTCACTTGTGAAAAGGAAGCTTAATAAGTGCGTAATTGCACTGATTGTTGTATTGATTTTTGAATTGCGTTGAACgtgtacttcaaatcttaaaagtatattttcatgAAACTGTAACTGTGCAGATCCtatgaaatgtatgaaataaaaggccacacacaattatttttatgaaaagttCCATGggtgtaattgtttttatactgtacaaactgtgtTATATCCCtacacctaaccctaccccttacaggaaactttctgctatttcagatttttaatacGCATTATAAGCGTTTTGAAAAGTGGGGACATGGGGTAAAGTCCTGAAAAATCACATTCATACATATGttatacccatgtcattatacacatttgtcctcatttttcattaaaaaaatgcacacacagttTATCTAATtctattttgtattacatttttgtttcagttaatgaTAAACATACTATAAAAATTAAGTTGCTTCATTTACTGACTGTTGAAAGAacaaaatagttttcatttgtACCCTGTTTATGAGAAGTGTTTGAGTTTCAGGTTTAAGTTGTCCATTACCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203205 lncRNA downstream 128166 10806521 ~ 10806780 (-) True G137588
TU203194 lncRNA downstream 148611 10785953 ~ 10786335 (-) True G137578
TU203189 lncRNA downstream 155540 10779130 ~ 10779406 (-) True G137573
TU203172 lncRNA downstream 180755 10753957 ~ 10754191 (-) True G137560
TU203171 lncRNA downstream 181688 10752847 ~ 10753258 (-) True G137559
XR_006247254.1 lncRNA upstream 176446 11113796 ~ 11114925 (-) True LOC122325111
TU203241 lncRNA upstream 176541 11113891 ~ 11114833 (-) False LOC122325111
TU203252 lncRNA upstream 254309 11191659 ~ 11194847 (-) True G137621
TU203293 lncRNA upstream 277876 11215226 ~ 11227365 (-) True G137644
TU203440 lncRNA upstream 674673 11612023 ~ 11613622 (-) True G137751
XM_043219454.1 mRNA downstream 2631 10925463 ~ 10932315 (-) False eif2b4
XM_043219453.1 mRNA downstream 2631 10925463 ~ 10932315 (-) True eif2b4
XM_043219461.1 mRNA downstream 12064 10895988 ~ 10922882 (-) True snx17
XM_043218784.1 mRNA upstream 124564 11061914 ~ 11067406 (-) True si:ch211-142k18.1
XM_043218785.1 mRNA upstream 194074 11131424 ~ 11136612 (-) True LOC122324412
XM_043220522.1 mRNA upstream 204595 11141945 ~ 11182183 (-) True LOC122325476
XM_043220208.1 mRNA upstream 363794 11301144 ~ 11319919 (-) True kita
XM_043220053.1 mRNA upstream 402513 11339863 ~ 11360039 (-) True pdgfra
unassigned_transcript_2506 other downstream 2302 10932562 ~ 10932644 (-) True trnal-cag_34
TU203048 other downstream 210877 10721921 ~ 10724069 (-) True G137469
TU203003 other downstream 364209 10567297 ~ 10570737 (-) True G137451
TU202840 other downstream 996069 9937965 ~ 9938877 (-) True G137330
XR_006247224.1 other downstream 1599885 9330137 ~ 9335061 (-) False pcsk9
TU203246 other upstream 195276 11132626 ~ 11136588 (-) False LOC122324412
TU203250 other upstream 237844 11175194 ~ 11182169 (-) False LOC122325476
XR_006247255.1 other upstream 429573 11366923 ~ 11368490 (-) False gsx2
XR_006247367.1 other upstream 691778 11629128 ~ 11629249 (-) True LOC122325628
XR_006247365.1 other upstream 692370 11629720 ~ 11629841 (-) True LOC122325626

Expression Profile