RNA id: XR_006247273.1


Basic Information

Item Value
RNA id XR_006247273.1
length 2259
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id LOC122325251
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21045825 ~ 21049976 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAAAcacaaaatttgtttttaaagtcgGTTTTATTTTACCTGCATACGagaacttatttttaaaagaaaaggcaTCAGACGGCTAAGGCGCCATAGGAACACCGATGCCGGTGAAGAAGTGGAACGCATCTCGGGAAGCACACTTTCCCGATCATTGTGTCAGTTAAAGACAGAGAGTTAGCACATGGCCATGGGAATGTGGTACCTTGCAAAAGAAACGATACACCAGAAGGAATGTCATTGAAAACAGTATACTCTCCAAAAGCTGCAAAGCTGCCTCCATTTCGCTAGCAACGCCCATCTTCCAACGATCCAACGAGGACAATATAAGGTGCCGACCTCGCAGTAAGGTATTGAACAGAAAGTAGGCGCAGTGCATTTCAATGCATCAGTGAAACCAGGATCTTTATCTCTGAGCTTAATTGAAAAGAGTGGGTTTGTAACGTGGCTCTAAAATGCTCTTCGTGCAGGCAGAGCGCTTTAATTGGGCTAAATTGATGAGAATTGAAAGCACTCAGTTAAAAGCAAGACACCACATTGGCAGGCGGCCTGTTGTGCCCAGTAACACAAAAGCACAAGGGCTCTTACCTGCACATTAGCATAGAGATGCCAAGGGTGAGGATCCGCCGTACacgattttaataataaacacattttcccGTTAGCCTCCAGCACAAGAGGGAGTCAAACATTTTCAGAGGCCGTTTGTCATGCATCTATAGACTACTTCAGCTCATTTCAACCGTAACACAGAACTAAAACATCGTTTTAGTCATTATGGCTTCAGCATATTTTGGGAAATGGATAAAAATTGAGTGTATGTTGGTtgtgtaagattttttttgctggAGACTCAAATGATCACCCAGAACTCGCTAATATAACATTGCTGGGTAGCTGTAAcctgttaaaatgtttatggGCTGTTAAAAAGAAGTCTGCCTTGCTTTGTACGATTTTATTTCTAGAGTCTGAAGGCCTAAACTGAGAATTTTTTTCAAGGATCCAGGATCCAGGATACTGTGTCTACTCACGCTAATGAGATTCTGAGTTATGGTTGGGTCAAGCTCTGTCATTTGAAGTGTGAAGAGATGTGGGTCACACACTCAACGGCTGTCATTTcagagtaaatattttaaaggagtTTCTCCTCTTTACATTTATAACCATTATGTCGTTTTACACTATTGAAAGGAATAGATGGCTGTGATCTCGTCCAGCTGAGCTCTAGTGCTGTAATAATGCCTCTGGCCTTCAGTCATCCTGGTGTCTTGTGCCTCTACCTGCTGACCTTCAGCAACAGAGGTCACATCCAGAGCATTCTTACCTCTTCAACTAAAGCTAAAGAGTTGACCTTGTGTGCTTAGCGTTTCTTATTCATTGTTTACCATATTTGGTTTTCTTGGTAAAATACTTTCATACAAACGCCACATGCACCACATACACCACATAGTTCTTCAGTCTATCACACATTGGCGGCTGCCTAGATTTTGGTTTAGAATATTATAGGCTATTATTAAGACCATTTGAGCTTGATGAATGCGGGCGAAAATAATGCTGCTGTGGTTGTGTGCAAaagctaaatgtttttattatcattataatcgGATAACATTACAATAAGTTGCATGTTTCAAATTGatgacatttctgcaaaaaaatgaaaatatgcaaCACTGAAGGTCAAAAATTgagacaatttattatttatgaaacaaGCTTATTTGTTGGCTGATGACGGGCAGCTTTTTTGCTGGTTGCTGGTTTGAACTCAAGTGCCATCACATTGTTTTGCCTTAAATTAATGCAATCATAATATGTTTGAGAAGTATTCTTGAGGGGAAGATAAGTGCATATAAATACTATCAGAGGTGGGCGAATCTGTGCGTTTCATTTCATGGTCATAATTCTCTCTATGGATGATTGCAGATTTGATggacagctgaaaagaacaTGCtcttgcctttaaaaaaaatggacacTGAAGCCACACTTATTAATGTCCAATGTCAAGTGTGTTTATCTGCATGTCTTATGCTGTATGTTCTGTTCTTTTCAGCAACTTGTTTTTGAGGTCTCAAGTTCCTTTGAAGGAATGAAAAAGGAAATGTGCtgaaatgtagatgagtttcttTGAAGAAATGTAACACTGCATCACTCGAAAAAATGAGTCCATCatccataatgtttttttttctcaacctCATTCCATAGCTATGCATTAGGTTCTTCTCTCTTTATTGTCCAAACAATTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207496 lncRNA downstream 49144 20996366 ~ 20996681 (-) True G140522
XR_006247242.1 lncRNA downstream 50312 20992521 ~ 20995513 (-) True LOC122324961
TU207404 lncRNA downstream 254124 20736588 ~ 20791701 (-) True G140449
TU207403 lncRNA downstream 254124 20789906 ~ 20791701 (-) False G140449
TU207360 lncRNA downstream 387468 20634310 ~ 20658357 (-) False pkib
TU207582 lncRNA upstream 33318 21083294 ~ 21083559 (-) True G140592
TU207583 lncRNA upstream 40008 21089984 ~ 21090943 (-) False nkx2.2b
TU207614 lncRNA upstream 149840 21199816 ~ 21203969 (-) False G140616
TU207612 lncRNA upstream 150661 21200637 ~ 21201961 (-) True G140615
TU207635 lncRNA upstream 197014 21246990 ~ 21247465 (-) True G140635
XM_043219753.1 mRNA downstream 70070 20968188 ~ 20975755 (-) True crnkl1
XM_043218874.1 mRNA downstream 80903 20945637 ~ 20964922 (-) False cd109
XM_043218873.1 mRNA downstream 80903 20945637 ~ 20964922 (-) True cd109
XM_043218863.1 mRNA downstream 288092 20745202 ~ 20757733 (-) False hmbox1b
XM_043219541.1 mRNA upstream 29828 21079804 ~ 21082714 (-) True nkx2.4b
XM_043220497.1 mRNA upstream 39428 21089404 ~ 21091008 (-) True nkx2.2b
XM_043219327.1 mRNA upstream 104409 21154385 ~ 21168059 (-) True LOC122324706
XM_043219167.1 mRNA upstream 200772 21250748 ~ 21256606 (-) True tram2
XM_043219157.1 mRNA upstream 209557 21259533 ~ 21264967 (-) False xkr5a
TU207486 other downstream 70075 20973404 ~ 20975750 (-) False crnkl1
TU207179 other downstream 982848 20061602 ~ 20062977 (-) True G140277
TU207099 other downstream 986222 20057624 ~ 20059603 (-) True G140227
TU207100 other downstream 987326 20057624 ~ 20058499 (-) False G140227
XR_006247245.1 other downstream 1430623 19601532 ~ 19615202 (-) False trim54
TU207613 other upstream 148734 21198710 ~ 21278741 (-) True G140616
TU207887 other upstream 459653 21509629 ~ 21512353 (-) False LOC122324936
TU207950 other upstream 682570 21732546 ~ 21741004 (-) False batf
TU207987 other upstream 791137 21841113 ~ 21841468 (-) True G140883
TU207994 other upstream 795830 21845806 ~ 21846917 (-) False LOC122325102

Expression Profile