RNA id: XR_006247320.1



Basic Information


Item Value
RNA id XR_006247320.1
length 116
RNA type snRNA
GC content 0.47
exon number 1
gene id LOC122325579
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1455863 ~ 1455978 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CTGCTCGAGTTTCTCTTCATTGTCGCACAAATCTTTCGCCTTTTACTAAAGATTTCCGTGGAGAGGAACCTTTGCGAGTGACCTGTATTTTTGGGGGCTCTGCTCACAGCAGAGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU199938 lncRNA downstream 33641 1413803 ~ 1422222 (-) True G135339
TU199918 lncRNA downstream 168554 1287092 ~ 1287309 (-) True G135323
TU199887 lncRNA downstream 217703 1237960 ~ 1238160 (-) True G135297
TU199793 lncRNA downstream 325787 1127292 ~ 1130076 (-) True G135225
TU199862 lncRNA downstream 348759 1106777 ~ 1107104 (-) True G135277
TU199988 lncRNA upstream 97133 1553111 ~ 1555177 (-) True G135365
TU199993 lncRNA upstream 99290 1555268 ~ 1557577 (-) True G135368
TU200020 lncRNA upstream 133485 1589463 ~ 1591235 (-) True G135382
TU200032 lncRNA upstream 153570 1609548 ~ 1610205 (-) True G135384
TU200040 lncRNA upstream 174074 1630052 ~ 1630329 (-) True G135389
XM_043219148.1 mRNA downstream 144208 1293218 ~ 1311655 (-) False tab2
XM_043219147.1 mRNA downstream 144208 1293218 ~ 1311655 (-) False tab2
XM_043219146.1 mRNA downstream 144208 1293218 ~ 1311655 (-) True tab2
XM_043219378.1 mRNA downstream 232848 1169796 ~ 1223015 (-) True lrfn2b
XM_043218923.1 mRNA upstream 102802 1558780 ~ 1571699 (-) False pcmt
XM_043218925.1 mRNA upstream 102802 1558780 ~ 1571698 (-) False pcmt
XM_043219143.1 mRNA upstream 137752 1593730 ~ 1610790 (-) False ankrd6b
XM_043219142.1 mRNA upstream 137752 1593730 ~ 1610789 (-) False ankrd6b
XM_043219139.1 mRNA upstream 137752 1593730 ~ 1610789 (-) False ankrd6b
unassigned_transcript_2215 other downstream 458 1455334 ~ 1455405 (-) True trnag-ucc_7
XR_006247319.1 other downstream 2118 1453630 ~ 1453745 (-) True LOC122325578
unassigned_transcript_2213 other downstream 2695 1453098 ~ 1453168 (-) True trnag-ucc_6
TU199865 other downstream 345002 1110425 ~ 1110861 (-) True G135279
TU199860 other downstream 350045 1103306 ~ 1105818 (-) True G135275
unassigned_transcript_2216 other upstream 876 1456854 ~ 1456925 (-) True trnag-ucc_8
XR_006247342.1 other upstream 1415 1457393 ~ 1457508 (-) True LOC122325602
XR_006247346.1 other upstream 2737 1458715 ~ 1458825 (-) True LOC122325607
unassigned_transcript_2218 other upstream 3608 1459586 ~ 1459657 (-) True trnag-ucc_9
XR_006247321.1 other upstream 4148 1460126 ~ 1460241 (-) True LOC122325580