RNA id: unassigned_transcript_2215



Basic Information


Item Value
RNA id unassigned_transcript_2215
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnag-ucc_7
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1455334 ~ 1455405 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGttgacccgggttcgattcccggccaacgCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU199938 lncRNA downstream 33112 1413803 ~ 1422222 (-) True G135339
TU199918 lncRNA downstream 168025 1287092 ~ 1287309 (-) True G135323
TU199887 lncRNA downstream 217174 1237960 ~ 1238160 (-) True G135297
TU199793 lncRNA downstream 325258 1127292 ~ 1130076 (-) True G135225
TU199862 lncRNA downstream 348230 1106777 ~ 1107104 (-) True G135277
TU199988 lncRNA upstream 97706 1553111 ~ 1555177 (-) True G135365
TU199993 lncRNA upstream 99863 1555268 ~ 1557577 (-) True G135368
TU200020 lncRNA upstream 134058 1589463 ~ 1591235 (-) True G135382
TU200032 lncRNA upstream 154143 1609548 ~ 1610205 (-) True G135384
TU200040 lncRNA upstream 174647 1630052 ~ 1630329 (-) True G135389
XM_043219148.1 mRNA downstream 143679 1293218 ~ 1311655 (-) False tab2
XM_043219147.1 mRNA downstream 143679 1293218 ~ 1311655 (-) False tab2
XM_043219146.1 mRNA downstream 143679 1293218 ~ 1311655 (-) True tab2
XM_043219378.1 mRNA downstream 232319 1169796 ~ 1223015 (-) True lrfn2b
XM_043218923.1 mRNA upstream 103375 1558780 ~ 1571699 (-) False pcmt
XM_043218925.1 mRNA upstream 103375 1558780 ~ 1571698 (-) False pcmt
XM_043219143.1 mRNA upstream 138325 1593730 ~ 1610790 (-) False ankrd6b
XM_043219142.1 mRNA upstream 138325 1593730 ~ 1610789 (-) False ankrd6b
XM_043219139.1 mRNA upstream 138325 1593730 ~ 1610789 (-) False ankrd6b
XR_006247319.1 other downstream 1589 1453630 ~ 1453745 (-) True LOC122325578
unassigned_transcript_2213 other downstream 2166 1453098 ~ 1453168 (-) True trnag-ucc_6
TU199865 other downstream 344473 1110425 ~ 1110861 (-) True G135279
TU199860 other downstream 349516 1103306 ~ 1105818 (-) True G135275
TU199861 other downstream 352221 1102705 ~ 1103113 (-) True G135276
XR_006247320.1 other upstream 458 1455863 ~ 1455978 (-) True LOC122325579
unassigned_transcript_2216 other upstream 1449 1456854 ~ 1456925 (-) True trnag-ucc_8
XR_006247342.1 other upstream 1988 1457393 ~ 1457508 (-) True LOC122325602
XR_006247346.1 other upstream 3310 1458715 ~ 1458825 (-) True LOC122325607
unassigned_transcript_2218 other upstream 4181 1459586 ~ 1459657 (-) True trnag-ucc_9