RNA id: unassigned_transcript_2238



Basic Information


Item Value
RNA id unassigned_transcript_2238
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnag-ucc_21
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1486603 ~ 1486674 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGTTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGttgacccgggttcgattcccggccaacgCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU199938 lncRNA downstream 64381 1413803 ~ 1422222 (-) True G135339
TU199918 lncRNA downstream 199294 1287092 ~ 1287309 (-) True G135323
TU199887 lncRNA downstream 248443 1237960 ~ 1238160 (-) True G135297
TU199793 lncRNA downstream 356527 1127292 ~ 1130076 (-) True G135225
TU199862 lncRNA downstream 379499 1106777 ~ 1107104 (-) True G135277
TU199988 lncRNA upstream 66437 1553111 ~ 1555177 (-) True G135365
TU199993 lncRNA upstream 68594 1555268 ~ 1557577 (-) True G135368
TU200020 lncRNA upstream 102789 1589463 ~ 1591235 (-) True G135382
TU200032 lncRNA upstream 122874 1609548 ~ 1610205 (-) True G135384
TU200040 lncRNA upstream 143378 1630052 ~ 1630329 (-) True G135389
XM_043219148.1 mRNA downstream 174948 1293218 ~ 1311655 (-) False tab2
XM_043219147.1 mRNA downstream 174948 1293218 ~ 1311655 (-) False tab2
XM_043219146.1 mRNA downstream 174948 1293218 ~ 1311655 (-) True tab2
XM_043219378.1 mRNA downstream 263588 1169796 ~ 1223015 (-) True lrfn2b
XM_043218923.1 mRNA upstream 72106 1558780 ~ 1571699 (-) False pcmt
XM_043218925.1 mRNA upstream 72106 1558780 ~ 1571698 (-) False pcmt
XM_043219143.1 mRNA upstream 107056 1593730 ~ 1610790 (-) False ankrd6b
XM_043219142.1 mRNA upstream 107056 1593730 ~ 1610789 (-) False ankrd6b
XM_043219139.1 mRNA upstream 107056 1593730 ~ 1610789 (-) False ankrd6b
XR_006247324.1 other downstream 894 1485594 ~ 1485709 (-) True LOC122325583
unassigned_transcript_2236 other downstream 1472 1485060 ~ 1485131 (-) True trnag-ucc_20
XR_006247333.1 other downstream 2447 1484043 ~ 1484156 (-) True LOC122325592
unassigned_transcript_2234 other downstream 3019 1483513 ~ 1483584 (-) True trnag-ucc_19
XR_006247341.1 other downstream 3992 1482497 ~ 1482611 (-) True LOC122325601
XR_006247326.1 other upstream 462 1487136 ~ 1487251 (-) True LOC122325585
unassigned_transcript_2240 other upstream 1481 1488155 ~ 1488225 (-) True trnag-ucc_22
XR_006247334.1 other upstream 2020 1488694 ~ 1488807 (-) True LOC122325593
unassigned_transcript_2241 other upstream 3012 1489686 ~ 1489759 (-) True trnag-ucc_23
XR_006247315.1 other upstream 3548 1490222 ~ 1490335 (-) True LOC122325573