RNA id: unassigned_transcript_2241



Basic Information


Item Value
RNA id unassigned_transcript_2241
length 74
RNA type tRNA
GC content 0.58
exon number 1
gene id trnag-ucc_23
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1489686 ~ 1489759 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCGTTGGTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGttgaccgggttcgattcccggccaacgCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU199938 lncRNA downstream 67464 1413803 ~ 1422222 (-) True G135339
TU199918 lncRNA downstream 202377 1287092 ~ 1287309 (-) True G135323
TU199887 lncRNA downstream 251526 1237960 ~ 1238160 (-) True G135297
TU199793 lncRNA downstream 359610 1127292 ~ 1130076 (-) True G135225
TU199862 lncRNA downstream 382582 1106777 ~ 1107104 (-) True G135277
TU199988 lncRNA upstream 63352 1553111 ~ 1555177 (-) True G135365
TU199993 lncRNA upstream 65509 1555268 ~ 1557577 (-) True G135368
TU200020 lncRNA upstream 99704 1589463 ~ 1591235 (-) True G135382
TU200032 lncRNA upstream 119789 1609548 ~ 1610205 (-) True G135384
TU200040 lncRNA upstream 140293 1630052 ~ 1630329 (-) True G135389
XM_043219148.1 mRNA downstream 178031 1293218 ~ 1311655 (-) False tab2
XM_043219147.1 mRNA downstream 178031 1293218 ~ 1311655 (-) False tab2
XM_043219146.1 mRNA downstream 178031 1293218 ~ 1311655 (-) True tab2
XM_043219378.1 mRNA downstream 266671 1169796 ~ 1223015 (-) True lrfn2b
XM_043218923.1 mRNA upstream 69021 1558780 ~ 1571699 (-) False pcmt
XM_043218925.1 mRNA upstream 69021 1558780 ~ 1571698 (-) False pcmt
XM_043219143.1 mRNA upstream 103971 1593730 ~ 1610790 (-) False ankrd6b
XM_043219142.1 mRNA upstream 103971 1593730 ~ 1610789 (-) False ankrd6b
XM_043219139.1 mRNA upstream 103971 1593730 ~ 1610789 (-) False ankrd6b
XR_006247334.1 other downstream 879 1488694 ~ 1488807 (-) True LOC122325593
unassigned_transcript_2240 other downstream 1461 1488155 ~ 1488225 (-) True trnag-ucc_22
XR_006247326.1 other downstream 2435 1487136 ~ 1487251 (-) True LOC122325585
unassigned_transcript_2238 other downstream 3012 1486603 ~ 1486674 (-) True trnag-ucc_21
XR_006247324.1 other downstream 3977 1485594 ~ 1485709 (-) True LOC122325583
XR_006247315.1 other upstream 463 1490222 ~ 1490335 (-) True LOC122325573
unassigned_transcript_2243 other upstream 1471 1491230 ~ 1491301 (-) True trnag-ucc_24
XR_006247335.1 other upstream 1998 1491757 ~ 1491870 (-) True LOC122325594
unassigned_transcript_2244 other upstream 2993 1492752 ~ 1492823 (-) True trnag-ucc_25
XR_006247317.1 other upstream 3519 1493278 ~ 1493392 (-) True LOC122325575