RNA id: unassigned_transcript_2292



Basic Information


Item Value
RNA id unassigned_transcript_2292
length 72
RNA type tRNA
GC content 0.63
exon number 1
gene id trnap-ugg_25
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2110686 ~ 2110757 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggctcgttggtctaggggtgtgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200237 lncRNA downstream 10445 2099996 ~ 2100241 (-) True G135542
TU200216 lncRNA downstream 97159 2005549 ~ 2013527 (-) True G135527
TU200155 lncRNA downstream 232564 1877914 ~ 1878122 (-) True G135480
TU200091 lncRNA downstream 357739 1752733 ~ 1752947 (-) True G135435
TU200090 lncRNA downstream 358230 1752156 ~ 1752456 (-) True G135434
TU200241 lncRNA upstream 247721 2358478 ~ 2358691 (-) True G135546
TU200345 lncRNA upstream 466375 2577132 ~ 2577488 (-) True G135627
TU200347 lncRNA upstream 468512 2579269 ~ 2579702 (-) True G135629
TU200382 lncRNA upstream 533424 2644181 ~ 2647081 (-) True G135658
TU200419 lncRNA upstream 621846 2732603 ~ 2737889 (-) True G135674
XM_043218731.1 mRNA downstream 118507 1989485 ~ 1992179 (-) True si:dkey-121j17.6
XM_043218779.1 mRNA downstream 122470 1976324 ~ 1988216 (-) True smyd2b
XM_043220216.1 mRNA downstream 145389 1934537 ~ 1965297 (-) False kcnk2b
XM_043218927.1 mRNA upstream 256907 2367664 ~ 2378853 (-) True frk
XM_043218926.1 mRNA upstream 272424 2383181 ~ 2388664 (-) True col10a1b
XM_043218692.1 mRNA upstream 355626 2466383 ~ 2473993 (-) True gpr63
XM_043218646.1 mRNA upstream 364114 2474871 ~ 2478814 (-) False ndufaf4
XM_043218645.1 mRNA upstream 364114 2474871 ~ 2478814 (-) True ndufaf4
unassigned_transcript_2291 other downstream 83 2110530 ~ 2110603 (-) True trnai-aau_84
unassigned_transcript_2290 other downstream 243 2110371 ~ 2110443 (-) True trnaf-gaa_93
unassigned_transcript_2289 other downstream 406 2110209 ~ 2110280 (-) True trnaq-cug_33
unassigned_transcript_2288 other downstream 13066 2097547 ~ 2097620 (-) True trnai-aau_83
unassigned_transcript_2287 other downstream 13224 2097390 ~ 2097462 (-) True trnaf-gaa_92
unassigned_transcript_2293 other upstream 823 2111580 ~ 2111651 (-) True trnaq-cug_34
unassigned_transcript_2294 other upstream 985 2111742 ~ 2111814 (-) True trnaf-gaa_94
unassigned_transcript_2295 other upstream 1142 2111899 ~ 2111972 (-) True trnai-aau_85
unassigned_transcript_2296 other upstream 1298 2112055 ~ 2112126 (-) True trnap-ugg_26
unassigned_transcript_2297 other upstream 2192 2112949 ~ 2113020 (-) True trnaq-cug_35