RNA id: unassigned_transcript_2315



Basic Information


Item Value
RNA id unassigned_transcript_2315
length 72
RNA type tRNA
GC content 0.50
exon number 1
gene id trnaq-cug_39
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2119783 ~ 2119854 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggttccatggtgtaatggttagcactttggactctgaatccagcgatccgagttcaaatctcggtgggacct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200237 lncRNA downstream 19542 2099996 ~ 2100241 (-) True G135542
TU200216 lncRNA downstream 106256 2005549 ~ 2013527 (-) True G135527
TU200155 lncRNA downstream 241661 1877914 ~ 1878122 (-) True G135480
TU200091 lncRNA downstream 366836 1752733 ~ 1752947 (-) True G135435
TU200090 lncRNA downstream 367327 1752156 ~ 1752456 (-) True G135434
TU200241 lncRNA upstream 238624 2358478 ~ 2358691 (-) True G135546
TU200345 lncRNA upstream 457278 2577132 ~ 2577488 (-) True G135627
TU200347 lncRNA upstream 459415 2579269 ~ 2579702 (-) True G135629
TU200382 lncRNA upstream 524327 2644181 ~ 2647081 (-) True G135658
TU200419 lncRNA upstream 612749 2732603 ~ 2737889 (-) True G135674
XM_043218731.1 mRNA downstream 127604 1989485 ~ 1992179 (-) True si:dkey-121j17.6
XM_043218779.1 mRNA downstream 131567 1976324 ~ 1988216 (-) True smyd2b
XM_043220216.1 mRNA downstream 154486 1934537 ~ 1965297 (-) False kcnk2b
XM_043218927.1 mRNA upstream 247810 2367664 ~ 2378853 (-) True frk
XM_043218926.1 mRNA upstream 263327 2383181 ~ 2388664 (-) True col10a1b
XM_043218692.1 mRNA upstream 346529 2466383 ~ 2473993 (-) True gpr63
XM_043218646.1 mRNA upstream 355017 2474871 ~ 2478814 (-) False ndufaf4
XM_043218645.1 mRNA upstream 355017 2474871 ~ 2478814 (-) True ndufaf4
unassigned_transcript_2314 other downstream 826 2118886 ~ 2118957 (-) True trnap-ugg_31
unassigned_transcript_2313 other downstream 980 2118730 ~ 2118803 (-) True trnai-aau_90
unassigned_transcript_2312 other downstream 1139 2118572 ~ 2118644 (-) True trnaf-gaa_98
unassigned_transcript_2311 other downstream 1302 2118410 ~ 2118481 (-) True trnaq-cug_38
unassigned_transcript_2310 other downstream 2197 2117516 ~ 2117586 (-) True trnap-ugg_30
unassigned_transcript_2316 other upstream 244 2120098 ~ 2120171 (-) True trnai-aau_91
unassigned_transcript_2317 other upstream 400 2120254 ~ 2120325 (-) True trnap-ugg_32
unassigned_transcript_2318 other upstream 1293 2121147 ~ 2121218 (-) True trnaq-cug_40
unassigned_transcript_2319 other upstream 1455 2121309 ~ 2121380 (-) True trnaf-gaa_99
unassigned_transcript_2320 other upstream 1765 2121619 ~ 2121690 (-) True trnap-ugg_33