RNA id: unassigned_transcript_2317



Basic Information


Item Value
RNA id unassigned_transcript_2317
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnap-ugg_32
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2120254 ~ 2120325 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccgggttcaaatcccggacgagccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU200237 lncRNA downstream 20013 2099996 ~ 2100241 (-) True G135542
TU200216 lncRNA downstream 106727 2005549 ~ 2013527 (-) True G135527
TU200155 lncRNA downstream 242132 1877914 ~ 1878122 (-) True G135480
TU200091 lncRNA downstream 367307 1752733 ~ 1752947 (-) True G135435
TU200090 lncRNA downstream 367798 1752156 ~ 1752456 (-) True G135434
TU200241 lncRNA upstream 238153 2358478 ~ 2358691 (-) True G135546
TU200345 lncRNA upstream 456807 2577132 ~ 2577488 (-) True G135627
TU200347 lncRNA upstream 458944 2579269 ~ 2579702 (-) True G135629
TU200382 lncRNA upstream 523856 2644181 ~ 2647081 (-) True G135658
TU200419 lncRNA upstream 612278 2732603 ~ 2737889 (-) True G135674
XM_043218731.1 mRNA downstream 128075 1989485 ~ 1992179 (-) True si:dkey-121j17.6
XM_043218779.1 mRNA downstream 132038 1976324 ~ 1988216 (-) True smyd2b
XM_043220216.1 mRNA downstream 154957 1934537 ~ 1965297 (-) False kcnk2b
XM_043218927.1 mRNA upstream 247339 2367664 ~ 2378853 (-) True frk
XM_043218926.1 mRNA upstream 262856 2383181 ~ 2388664 (-) True col10a1b
XM_043218692.1 mRNA upstream 346058 2466383 ~ 2473993 (-) True gpr63
XM_043218646.1 mRNA upstream 354546 2474871 ~ 2478814 (-) False ndufaf4
XM_043218645.1 mRNA upstream 354546 2474871 ~ 2478814 (-) True ndufaf4
unassigned_transcript_2316 other downstream 83 2120098 ~ 2120171 (-) True trnai-aau_91
unassigned_transcript_2315 other downstream 400 2119783 ~ 2119854 (-) True trnaq-cug_39
unassigned_transcript_2314 other downstream 1297 2118886 ~ 2118957 (-) True trnap-ugg_31
unassigned_transcript_2313 other downstream 1451 2118730 ~ 2118803 (-) True trnai-aau_90
unassigned_transcript_2312 other downstream 1610 2118572 ~ 2118644 (-) True trnaf-gaa_98
unassigned_transcript_2318 other upstream 822 2121147 ~ 2121218 (-) True trnaq-cug_40
unassigned_transcript_2319 other upstream 984 2121309 ~ 2121380 (-) True trnaf-gaa_99
unassigned_transcript_2320 other upstream 1294 2121619 ~ 2121690 (-) True trnap-ugg_33
unassigned_transcript_2321 other upstream 2190 2122515 ~ 2122586 (-) True trnaq-cug_41
unassigned_transcript_2322 other upstream 2352 2122677 ~ 2122749 (-) True trnaf-gaa_100