RNA id: unassigned_transcript_2447



Basic Information


Item Value
RNA id unassigned_transcript_2447
length 84
RNA type tRNA
GC content 0.54
exon number 2
gene id trnal-caa_3
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5544306 ~ 5544417 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtcagaatggccgagtggtctaaggcgccagactcaagttctggtctccaaatggaggcgtgggttcaaatcccacttctgaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU201152 lncRNA downstream 424540 5112173 ~ 5119766 (-) True G136188
TU201141 lncRNA downstream 447245 5091300 ~ 5097061 (-) True G136180
TU201134 lncRNA downstream 510502 5033599 ~ 5033804 (-) True G136176
TU201132 lncRNA downstream 525440 5018361 ~ 5018866 (-) True G136175
TU201129 lncRNA downstream 525592 5018361 ~ 5018714 (-) False G136175
TU201376 lncRNA upstream 107882 5652299 ~ 5652925 (-) True G136350
TU201394 lncRNA upstream 156764 5701181 ~ 5701475 (-) True G136356
TU201429 lncRNA upstream 315536 5859953 ~ 5860623 (-) True G136368
TU201458 lncRNA upstream 504551 6048968 ~ 6050633 (-) True G136388
TU201487 lncRNA upstream 584081 6128498 ~ 6145661 (-) True G136398
XM_043219879.1 mRNA downstream 6930 5520146 ~ 5537376 (-) True tagapb
XM_043219878.1 mRNA downstream 19137 5520146 ~ 5525169 (-) False tagapb
XM_043220024.1 mRNA downstream 30266 5504256 ~ 5514040 (-) True rsph3
XM_043220023.1 mRNA downstream 30266 5504257 ~ 5514040 (-) False rsph3
XM_043218907.1 mRNA downstream 42022 5479674 ~ 5502284 (-) False LOC122324477
XM_043219520.1 mRNA upstream 46924 5591341 ~ 5598666 (-) True LOC122324832
XM_043219395.1 mRNA upstream 79783 5624200 ~ 5646907 (-) True LOC122324749
XM_043219396.1 mRNA upstream 79783 5624200 ~ 5636252 (-) False LOC122324749
XM_043219523.1 mRNA upstream 144966 5689383 ~ 5696894 (-) True LOC122324836
XM_043219152.1 mRNA upstream 345064 5889481 ~ 5893291 (-) False si:ch211-22i13.2
unassigned_transcript_2446 other downstream 905 5543290 ~ 5543401 (-) True trnal-caa_2
unassigned_transcript_2445 other downstream 1918 5542277 ~ 5542388 (-) True trnal-caa_1
TU201137 other downstream 259758 5170525 ~ 5284548 (-) False LOC122324433
TU201117 other downstream 514774 5024806 ~ 5029532 (-) False selenol
unassigned_transcript_2448 other upstream 905 5545322 ~ 5545433 (-) True trnal-caa_4
unassigned_transcript_2449 other upstream 2932 5547349 ~ 5547460 (-) True trnal-caa_5
unassigned_transcript_2450 other upstream 5937 5550354 ~ 5550465 (-) True trnal-caa_6
unassigned_transcript_2451 other upstream 6442 5550859 ~ 5550970 (-) True trnal-caa_7
unassigned_transcript_2452 other upstream 7419 5551836 ~ 5551947 (-) True trnal-caa_8