RNA id: unassigned_transcript_2463



Basic Information


Item Value
RNA id unassigned_transcript_2463
length 84
RNA type tRNA
GC content 0.54
exon number 2
gene id trnal-caa_18
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5560467 ~ 5560578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtcagaatggccgagtggtctaaggcgccagactcaagttctggtctccaaatggaggcgtgggttcaaatcccacttctgaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU201152 lncRNA downstream 440701 5112173 ~ 5119766 (-) True G136188
TU201141 lncRNA downstream 463406 5091300 ~ 5097061 (-) True G136180
TU201134 lncRNA downstream 526663 5033599 ~ 5033804 (-) True G136176
TU201132 lncRNA downstream 541601 5018361 ~ 5018866 (-) True G136175
TU201129 lncRNA downstream 541753 5018361 ~ 5018714 (-) False G136175
TU201376 lncRNA upstream 91721 5652299 ~ 5652925 (-) True G136350
TU201394 lncRNA upstream 140603 5701181 ~ 5701475 (-) True G136356
TU201429 lncRNA upstream 299375 5859953 ~ 5860623 (-) True G136368
TU201458 lncRNA upstream 488390 6048968 ~ 6050633 (-) True G136388
TU201487 lncRNA upstream 567920 6128498 ~ 6145661 (-) True G136398
XM_043219879.1 mRNA downstream 23091 5520146 ~ 5537376 (-) True tagapb
XM_043219878.1 mRNA downstream 35298 5520146 ~ 5525169 (-) False tagapb
XM_043220024.1 mRNA downstream 46427 5504256 ~ 5514040 (-) True rsph3
XM_043220023.1 mRNA downstream 46427 5504257 ~ 5514040 (-) False rsph3
XM_043218907.1 mRNA downstream 58183 5479674 ~ 5502284 (-) False LOC122324477
XM_043219520.1 mRNA upstream 30763 5591341 ~ 5598666 (-) True LOC122324832
XM_043219395.1 mRNA upstream 63622 5624200 ~ 5646907 (-) True LOC122324749
XM_043219396.1 mRNA upstream 63622 5624200 ~ 5636252 (-) False LOC122324749
XM_043219523.1 mRNA upstream 128805 5689383 ~ 5696894 (-) True LOC122324836
XM_043219152.1 mRNA upstream 328903 5889481 ~ 5893291 (-) False si:ch211-22i13.2
unassigned_transcript_2462 other downstream 359 5559997 ~ 5560108 (-) True trnal-caa_17
unassigned_transcript_2461 other downstream 1239 5559117 ~ 5559228 (-) True trnal-uaa_29
unassigned_transcript_2460 other downstream 2080 5558276 ~ 5558387 (-) True trnal-caa_16
unassigned_transcript_2459 other downstream 3056 5557300 ~ 5557411 (-) True trnal-caa_15
unassigned_transcript_2458 other downstream 4536 5555820 ~ 5555931 (-) True trnal-caa_14
unassigned_transcript_2464 other upstream 3258 5563836 ~ 5563946 (-) True trnal-caa_19
unassigned_transcript_2465 other upstream 5720 5566298 ~ 5566409 (-) True trnal-caa_20
unassigned_transcript_2466 other upstream 7128 5567706 ~ 5567817 (-) True trnal-caa_21
unassigned_transcript_2467 other upstream 7499 5568077 ~ 5568188 (-) True trnal-caa_22
unassigned_transcript_2468 other upstream 8890 5569468 ~ 5569579 (-) True trnal-caa_23