RNA id: unassigned_transcript_2473



Basic Information


Item Value
RNA id unassigned_transcript_2473
length 84
RNA type tRNA
GC content 0.54
exon number 2
gene id trnal-caa_28
representative True

Chromosome Information


Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 5574229 ~ 5574339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtcagaatggccgagtggtctaaggcgccagactcaagttctggtctccaaatggaggcgtgggttcaaatcccacttctgaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU201152 lncRNA downstream 454463 5112173 ~ 5119766 (-) True G136188
TU201141 lncRNA downstream 477168 5091300 ~ 5097061 (-) True G136180
TU201134 lncRNA downstream 540425 5033599 ~ 5033804 (-) True G136176
TU201132 lncRNA downstream 555363 5018361 ~ 5018866 (-) True G136175
TU201129 lncRNA downstream 555515 5018361 ~ 5018714 (-) False G136175
TU201376 lncRNA upstream 77960 5652299 ~ 5652925 (-) True G136350
TU201394 lncRNA upstream 126842 5701181 ~ 5701475 (-) True G136356
TU201429 lncRNA upstream 285614 5859953 ~ 5860623 (-) True G136368
TU201458 lncRNA upstream 474629 6048968 ~ 6050633 (-) True G136388
TU201487 lncRNA upstream 554159 6128498 ~ 6145661 (-) True G136398
XM_043219879.1 mRNA downstream 36853 5520146 ~ 5537376 (-) True tagapb
XM_043219878.1 mRNA downstream 49060 5520146 ~ 5525169 (-) False tagapb
XM_043220024.1 mRNA downstream 60189 5504256 ~ 5514040 (-) True rsph3
XM_043220023.1 mRNA downstream 60189 5504257 ~ 5514040 (-) False rsph3
XM_043218907.1 mRNA downstream 71945 5479674 ~ 5502284 (-) False LOC122324477
XM_043219520.1 mRNA upstream 17002 5591341 ~ 5598666 (-) True LOC122324832
XM_043219395.1 mRNA upstream 49861 5624200 ~ 5646907 (-) True LOC122324749
XM_043219396.1 mRNA upstream 49861 5624200 ~ 5636252 (-) False LOC122324749
XM_043219523.1 mRNA upstream 115044 5689383 ~ 5696894 (-) True LOC122324836
XM_043219152.1 mRNA upstream 315142 5889481 ~ 5893291 (-) False si:ch211-22i13.2
unassigned_transcript_2472 other downstream 1409 5572709 ~ 5572820 (-) True trnal-caa_27
unassigned_transcript_2471 other downstream 2382 5571737 ~ 5571847 (-) True trnal-caa_26
unassigned_transcript_2470 other downstream 3765 5570353 ~ 5570464 (-) True trnal-caa_25
unassigned_transcript_2469 other downstream 4271 5569847 ~ 5569958 (-) True trnal-caa_24
unassigned_transcript_2468 other downstream 4650 5569468 ~ 5569579 (-) True trnal-caa_23
unassigned_transcript_2474 other upstream 395 5574734 ~ 5574845 (-) True trnal-caa_29
unassigned_transcript_2475 other upstream 1372 5575711 ~ 5575822 (-) True trnal-caa_30
unassigned_transcript_2476 other upstream 1879 5576218 ~ 5576329 (-) True trnal-caa_31
unassigned_transcript_2477 other upstream 6402 5580741 ~ 5580852 (-) True trnal-caa_32
unassigned_transcript_2478 other upstream 8938 5583277 ~ 5583388 (-) True trnal-caa_33